PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G056500.3 | ||||||||
Common Name | B456_005G056500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 651aa MW: 73001.6 Da PI: 6.9056 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 41.7 | 3.1e-13 | 35 | 62 | 49 | 76 |
EEETTT--SS--S-STTTT-------S- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkk 76 fh ls+fDe+krsCrr+L++hn+rrr+k Gorai.005G056500.3 35 FHLLSDFDEGKRSCRRKLERHNNRRRRK 62 *************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 11.904 | 1 | 62 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.89E-10 | 34 | 65 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.7E-7 | 35 | 62 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MVKARDIANS VAIFEVWIIS ISPIIEVMKY ALCWFHLLSD FDEGKRSCRR KLERHNNRRR 60 RKPVGSKTEV NKESLGAVQS EDIACDGEAG KDDLSLSGQT AEDPPFESED GLVSADCSAP 120 MLQTVNNDST VALIDTGTDG GKEDLKFSIS TSYHDNRTAY SSMCPTGRIS FKLYDWNPAE 180 FPRRLRHQIF QWLADMPVEL EGYIRPGCTI LTVFISMPKN MWMKLSENPM TYMHDFVFTP 240 GRMLHGRGLM TIHLNNMIFR ASKGGSSLVK LDMGVQAPRL HYVHPSCFEA GKPMEFVACG 300 SNLLQPKLQF LVSFAGRYLP YDYCLASAHV NATEGSSSCD HLLYKIYVPQ TESDLFGPVF 360 IEVENQSGLS NFIPVLIGDK DVCSEMKVIQ QGFDASLFWG GSQISANRSS CETSTWRQKA 420 YSELVLDIAW LLREPKSENF QETMASSQIQ RFNCLLNFLI QNKSTVILKK VLQNLKNVVE 480 EAGFNGTDDP DTRLLKKYMD YGRDILNNKL QEGERPVLLS EYIEQEGKWN SQSSLKNDGL 540 FVPNGSQDLG ERTNAKFQTM MASTTLTRSE TVPLLNKEIV MNVNLSKELP RKSCSTIFAT 600 TTLRSCPALF VVATAAICLG ICAVFLHPNK VGEFAVTIRR CLSKRSYIIE * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 60 | RRKLERHNNRRRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots rosette leaves, cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:24335506}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269|PubMed:19122104, ECO:0000269|PubMed:22374396, ECO:0000269|PubMed:25516599, ECO:0000269|PubMed:26511915, ECO:0000269|PubMed:27352843}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012482069.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 7 isoform X1 | ||||
Swissprot | Q8S9G8 | 0.0 | SPL7_ARATH; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A0D2N8B1 | 0.0 | A0A0D2N8B1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G056500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.2 | 0.0 | squamosa promoter binding protein-like 7 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G056500.3 |