PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G049200.1
Common NameB456_005G049200, LOC105796721
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 138aa    MW: 15237.7 Da    PI: 8.8135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G049200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-201668156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                        ++y+GVr+++ +g+++AeIrd    + + +r++lg+f taeeAa+a+++a+ +++g+
  Gorai.005G049200.1 16 TRYRGVRRRP-WGKFAAEIRDS---NrHGARVWLGTFNTAEEAARAYDRAAYSMRGH 68
                        68********.**********4...3234**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.06E-161675No hitNo description
PfamPF008472.6E-161668IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-311777IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-231777IPR016177DNA-binding domain
SMARTSM003808.0E-341781IPR001471AP2/ERF domain
PROSITE profilePS5103223.7621775IPR001471AP2/ERF domain
PRINTSPR003679.1E-121829IPR001471AP2/ERF domain
PRINTSPR003679.1E-124157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MEGSSSKGKE EGGETTRYRG VRRRPWGKFA AEIRDSNRHG ARVWLGTFNT AEEAARAYDR  60
AAYSMRGHLA ILNFPQEYPM GSGGATAYRG SSSAASSSSS SSSSMDQRGK QVFEIEYLDD  120
KLLEELLENE EKNKEKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-4181375130Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6166900.0JX616690.1 Gossypium hirsutum clone NBRI_GE61537 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481967.15e-96PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC51e-43ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D2N8181e-94A0A0D2N818_GOSRA; Uncharacterized protein
STRINGGorai.005G049200.12e-95(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.15e-27ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]