PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G044800.8 | ||||||||
Common Name | B456_005G044800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CPP | ||||||||
Protein Properties | Length: 645aa MW: 70685.8 Da PI: 4.7485 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 51.2 | 2.6e-16 | 459 | 497 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk Gorai.005G044800.8 459 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 497 689**********************************96 PP | |||||||
2 | TCR | 52.6 | 9e-17 | 544 | 582 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN Gorai.005G044800.8 544 RHKRGCNCKKSNCLKKYCECFQGGVGCSINCRCEGCKNA 582 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.5E-18 | 458 | 499 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.365 | 459 | 584 | IPR005172 | CRC domain |
Pfam | PF03638 | 8.5E-12 | 461 | 496 | IPR005172 | CRC domain |
SMART | SM01114 | 2.1E-17 | 544 | 585 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.8E-12 | 546 | 582 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MMDTPEKAQI SSSLSKFEDS PVFNYINSLS PIKPVKSIHV TQTFNPLSFA SLPSIFTSPH 60 VSSHKESRFL KSYTDPLKPE SSSADGTKVR TNEEAGADAQ ENFDQGVSRG ETSFEMPNEP 120 SRIAIGLPQT LKYDCGSPDC DATPCVIKTT CVSDTSLAIV PFVQEASEKG LSDGVEIRDT 180 FQVEQKRDTI GSEWESLISD TSDLLIFNSP NDSEAFRGVI QKSLDPGVLI SQFSQDDINE 240 ACQTTVDLDK YKDQTEGAVE MNEMNPVNES FEDASVTNFI SGSLTDYMET RMSAPYSFKP 300 DSNLHRGFRR RCLDFEMLAA RRKNLDGGST TNSSTDNKLV PGKPDSDSPR CIVPGIGLHL 360 NALAIASRDN KNMKLETLSS GTQKLSFPSL NSPRTGGAET AYESLPSAST ERESDAVENG 420 VQLAEDASQA SAYLVNEEFN QNSPKKKRRR LEQAGEGESC KRCNCKKSKC LKLYCECFAA 480 GVYCIEPCSC QDCFNKPIHE DTVLATRKQI ESRNPLAFAP KVIRTSDSVP EVRDDLITTP 540 SSARHKRGCN CKKSNCLKKY CECFQGGVGC SINCRCEGCK NAFGRKDGSA IVETDGEPGE 600 EEMDPSEKNA LDKNFEKPDI LNNEEQNPAS ALPTTPLQLC RFLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-16 | 461 | 581 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-16 | 461 | 581 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 443 | 450 | PKKKRRRL |
2 | 444 | 449 | KKKRRR |
3 | 446 | 450 | KRRRL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481904.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A0D2N7T4 | 0.0 | A0A0D2N7T4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G044800.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 1e-127 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G044800.8 |
Publications ? help Back to Top | |||
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