PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G044800.7
Common NameB456_005G044800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 477aa    MW: 52054 Da    PI: 8.4142
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G044800.7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.71.8e-16180218240
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  Gorai.005G044800.7 180 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 218
                         689**********************************96 PP
2TCR53.16.1e-17265303139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN 
  Gorai.005G044800.7 265 RHKRGCNCKKSNCLKKYCECFQGGVGCSINCRCEGCKNA 303
                         589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-18179220IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.365180305IPR005172CRC domain
PfamPF036385.8E-12182217IPR005172CRC domain
SMARTSM011142.1E-17265306IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.6E-12267303IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MKVLSLDWLL LTMLLYVSAQ PDSNLHRGFR RRCLDFEMLA ARRKNLDGGS TTNSSTDNKL  60
VPGKPDSDSP RCIVPGIGLH LNALAIASRD NKNMKLETLS SGTQKLSFPS LNSPRTGGAE  120
TAYESLPSAS TERESDAVEN GVQLAEDASQ ASAYLVNEEF NQNSPKKKRR RLEQAGEGES  180
CKRCNCKKSK CLKLYCECFA AGVYCIEPCS CQDCFNKPIH EDTVLATRKQ IESRNPLAFA  240
PKVIRTSDSV PEVRDDLITT PSSARHKRGC NCKKSNCLKK YCECFQGGVG CSINCRCEGC  300
KNAFGRKDGS AIVETDGEPG EEEMDPSEKN ALDKNFEKPD ILNNEEQNPA SALPTTPLQL  360
CRPLVQLPFS SKSKPPRSFI AIGSSSALYT GQRYGKPSII RPQNIIEKHF QTIAEDETPE  420
ILRGNSSPGT GIKTSSPNSK RISPPQCELG STPGGRSGRK LILQSIPSFP SLTPKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-1718430214120Protein lin-54 homolog
5fd3_B7e-1718430214120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164171PKKKRRRL
2165170KKKRRR
3167171KRRRL
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the late stage of pollen development in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}.
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in all the aerial organs with highest expression in flowers. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481904.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
SwissprotF4JIF51e-138TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLA0A0D2SAX90.0A0A0D2SAX9_GOSRA; Uncharacterized protein
STRINGGorai.005G044800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-114TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]