PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G044800.3
Common NameB456_005G044800, LOC105796674
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 641aa    MW: 69963.5 Da    PI: 5.4062
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G044800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.22.5e-16344382240
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  Gorai.005G044800.3 344 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 382
                         689**********************************96 PP

2TCR52.68.9e-17429467139
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN 
  Gorai.005G044800.3 429 RHKRGCNCKKSNCLKKYCECFQGGVGCSINCRCEGCKNA 467
                         589***********************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-18343384IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.365344469IPR005172CRC domain
PfamPF036388.5E-12346381IPR005172CRC domain
SMARTSM011142.1E-17429470IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.8E-12431467IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MPNEPSRIAI GLPQTLKYDC GSPDCDATPC VIKTTCVSDT SLAIVPFVQE ASEKGLSDGV  60
EIRDTFQVEQ KRDTIGSEWE SLISDTSDLL IFNSPNDSEA FRGVIQKSLD PGVLISQFSQ  120
DDINEACQTT VDLDKYKDQT EGAVEMNEMN PVNESFEDAS VTNFISGSLT DYMETRMSAP  180
YSFKPDSNLH RGFRRRCLDF EMLAARRKNL DGGSTTNSST DNKLVPGKPD SDSPRCIVPG  240
IGLHLNALAI ASRDNKNMKL ETLSSGTQKL SFPSLNSPRT GGAETAYESL PSASTERESD  300
AVENGVQLAE DASQASAYLV NEEFNQNSPK KKRRRLEQAG EGESCKRCNC KKSKCLKLYC  360
ECFAAGVYCI EPCSCQDCFN KPIHEDTVLA TRKQIESRNP LAFAPKVIRT SDSVPEVRDD  420
LITTPSSARH KRGCNCKKSN CLKKYCECFQ GGVGCSINCR CEGCKNAFGR KDGSAIVETD  480
GEPGEEEMDP SEKNALDKNF EKPDILNNEE QNPASALPTT PLQLCRPLVQ LPFSSKSKPP  540
RSFIAIGSSS ALYTGQRYGK PSIIRPQNII EKHFQTIAED ETPEILRGNS SPGTGIKTSS  600
PNSKRISPPQ CELGSTPGGR SGRKLILQSI PSFPSLTPKH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1634846614120Protein lin-54 homolog
5fd3_B1e-1634846614120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328335PKKKRRRL
2329334KKKRRR
3331335KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481904.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLA0A0D2RFH10.0A0A0D2RFH1_GOSRA; Uncharacterized protein
STRINGGorai.005G044800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-121TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]