PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G044800.3 | ||||||||
Common Name | B456_005G044800, LOC105796674 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CPP | ||||||||
Protein Properties | Length: 641aa MW: 69963.5 Da PI: 5.4062 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 51.2 | 2.5e-16 | 344 | 382 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk Gorai.005G044800.3 344 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 382 689**********************************96 PP | |||||||
2 | TCR | 52.6 | 8.9e-17 | 429 | 467 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN Gorai.005G044800.3 429 RHKRGCNCKKSNCLKKYCECFQGGVGCSINCRCEGCKNA 467 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.5E-18 | 343 | 384 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.365 | 344 | 469 | IPR005172 | CRC domain |
Pfam | PF03638 | 8.5E-12 | 346 | 381 | IPR005172 | CRC domain |
SMART | SM01114 | 2.1E-17 | 429 | 470 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.8E-12 | 431 | 467 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MPNEPSRIAI GLPQTLKYDC GSPDCDATPC VIKTTCVSDT SLAIVPFVQE ASEKGLSDGV 60 EIRDTFQVEQ KRDTIGSEWE SLISDTSDLL IFNSPNDSEA FRGVIQKSLD PGVLISQFSQ 120 DDINEACQTT VDLDKYKDQT EGAVEMNEMN PVNESFEDAS VTNFISGSLT DYMETRMSAP 180 YSFKPDSNLH RGFRRRCLDF EMLAARRKNL DGGSTTNSST DNKLVPGKPD SDSPRCIVPG 240 IGLHLNALAI ASRDNKNMKL ETLSSGTQKL SFPSLNSPRT GGAETAYESL PSASTERESD 300 AVENGVQLAE DASQASAYLV NEEFNQNSPK KKRRRLEQAG EGESCKRCNC KKSKCLKLYC 360 ECFAAGVYCI EPCSCQDCFN KPIHEDTVLA TRKQIESRNP LAFAPKVIRT SDSVPEVRDD 420 LITTPSSARH KRGCNCKKSN CLKKYCECFQ GGVGCSINCR CEGCKNAFGR KDGSAIVETD 480 GEPGEEEMDP SEKNALDKNF EKPDILNNEE QNPASALPTT PLQLCRPLVQ LPFSSKSKPP 540 RSFIAIGSSS ALYTGQRYGK PSIIRPQNII EKHFQTIAED ETPEILRGNS SPGTGIKTSS 600 PNSKRISPPQ CELGSTPGGR SGRKLILQSI PSFPSLTPKH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-16 | 348 | 466 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-16 | 348 | 466 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 328 | 335 | PKKKRRRL |
2 | 329 | 334 | KKKRRR |
3 | 331 | 335 | KRRRL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481904.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A0D2RFH1 | 0.0 | A0A0D2RFH1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G044800.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-121 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G044800.3 |
Entrez Gene | 105796674 |
Publications ? help Back to Top | |||
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