PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G040900.1 | ||||||||
Common Name | B456_005G040900, LOC105796628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YC | ||||||||
Protein Properties | Length: 259aa MW: 28431 Da PI: 6.0132 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.6 | 2.5e-55 | 82 | 186 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 ql+ fw++q ie+atdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+di aa+trtdi Gorai.005G040900.1 82 QLQRFWANQyqeIEQATDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIGAAITRTDI 172 89******9999******************************************************************************* PP NF-YC 89 fdflvdivprdelk 102 fdflvdivpr+++k Gorai.005G040900.1 173 FDFLVDIVPREDIK 186 **********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.87E-33 | 37 | 176 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.8E-37 | 96 | 168 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.4E-21 | 104 | 167 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDQQGHGQTS AMGIVGSAAA VPYGITGYQA NQMMGTSTPG SVGSVRPPTQ PAGPSASSAQ 60 LAQQQLAYQH IHQQQQQQLQ QQLQRFWANQ YQEIEQATDF KNHSLPLARI KKIMKADEDV 120 RMISAEAPVV FARACEMFIL ELTLRSWNHT EENKRRTLQK NDIGAAITRT DIFDFLVDIV 180 PREDIKDEVL ASVPRVEGSA DGLPYYYMPP QLAPQAGAPG MTVGKPVMDP TFYGQKSGPY 240 AGQPVWPPQQ QQQPPPDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-62 | 90 | 182 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 160 | RRTLQKN |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11867211, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481835.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_012481837.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q8L4B2 | 1e-84 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A0D2PMH4 | 0.0 | A0A0D2PMH4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G040900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 2e-75 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G040900.1 |
Entrez Gene | 105796628 |