PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G016000.1
Common NameB456_005G016000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 491aa    MW: 56793.9 Da    PI: 6.9483
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G016000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.33.9e-1681322128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy..kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         p G++F+P+ +e+  ++L + v+g+ l+  + + +vdiy  + ePw++    k++++ ++ F+k +kk+    r  r++ sg W a   +k
  Gorai.005G016000.1   8 PYGYQFRPSRQEIFIRFLFPIVNGECLPS-SPLIQVDIYgeNKEPWNIF-D-KNSKTPYWVFTKLKKKS--RLRIDRTAGSGCWLARN-TK 92 
                         89************************999.67889999933469****6.2.23344555666666654..57***********9875.59 PP

                 NAM  91 evlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                         ev++ +g+l g  k ++f   + +  +  + +W+mhe++l
  Gorai.005G016000.1  93 EVYDDGGKLLGYHKYFTFSckNDEWMNQDNGHWIMHEFSL 132
                         99*99*************9643455677899*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-223148IPR003441NAC domain
PROSITE profilePS5100524.537148IPR003441NAC domain
PfamPF023654.6E-108132IPR003441NAC domain
PfamPF045024.8E-10359427IPR007590CWC16 protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MLNSSPVPYG YQFRPSRQEI FIRFLFPIVN GECLPSSPLI QVDIYGENKE PWNIFDKNSK  60
TPYWVFTKLK KKSRLRIDRT AGSGCWLARN TKEVYDDGGK LLGYHKYFTF SCKNDEWMNQ  120
DNGHWIMHEF SLKREESNDY VICEIRNKNA ADLDSDSKLN TKKRRILSSE KNHEEMNLPS  180
KPNDEEMGLI SIFSESDHKD LSSDVTFETR TRNDGLDLNL NLKLNDEDLR LYVNHEDPKI  240
INKDVAGRNL NLSKLESDDE EIESISRSSN HEDLSSDVTF EIRNRNDDLG LNLNLKSNDE  300
DGKKRYLRQN IPIENLCDLR RWEPAGLRSV EASEGPAAEE STDEEILNLG VLKMRKWRER  360
ERNRRKSQRM GDAMKSLENR TLDSKREIDI LAALDKMKSR KSRHATVSVD SMLDALQRTA  420
AEKAAMFLTL MSSLMQKPKE FVPRISDDVF IYDEDLNCLS NGLNRRKVSE ESSSDPARFK  480
SSVVKKKPKK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632574.11e-176PREDICTED: NAC domain-containing protein 2-like
TrEMBLA0A0D2N6R90.0A0A0D2N6R9_GOSRA; Uncharacterized protein
STRINGGorai.005G016000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3620422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.28e-10NAC family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]