PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G013500.3

Common Name

B456_005G013500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 990aa MW: 110064 Da PI: 5.8015

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G013500.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.8	2.5e-29	597	647	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++s+++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Gorai.005G013500.3 597 EKNVSFSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 647 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.95	584	667	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-26	599	647	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.35E-20	881	972	No hit	No description
PROSITE profile	PS51745	17.042	889	971	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.9E-23	889	971	No hit	No description
SMART	SM00666	8.8E-19	889	971	IPR000270	PB1 domain
Pfam	PF00564	4.9E-15	890	970	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 990 aa Download sequence Send to blast
MEYPFSSREK GNGYWVPPRT QMEVGEQFGG NTRNLLFEDP FNYSELMNLD AYGGWCSGSA 60 ATDQMFASSG FFSYPSMSHA SFDSTNSIGQ SSSTYVESGY ALGGMDSSYN CADRTVFRQT 120 DEHFSNTVDS KGVELGVRQH TDGNKQNDTS YLGHLLISRP IGRSLDEKML RALSLFKDLS 180 GEGILAQVWV PIKHGDQYML TTSDQPYLLD QMLLGYREVS RTYTFSAEQK PGSFPGLPGR 240 VFLSRVPEWT SNVIHYSKAE YLRITHAVNH EVRGSIGLPV FQPPEMSCCA VLELVTTKEK 300 PNFHSEMEHV CRALEAVNLR TLARPRFLPQ CLSKNQRAAL AEITDVLRAV CHAHRLPLAL 360 TWIPCNYTEE AENEYIKMRV REGNKSWDGK CVLCIEDTAC YVNEREMQDF VHACVEHYLE 420 GGQGIAGKAL QSNHPFFSAD VKTYDVSDYP LVHHARKFNL NAAVAIRLRS TYTSDDDYIL 480 ELFLPINMKG SLEQQLLLNN LSGTMQRICR TLRTVSDAEI VGERSKFEFQ RVTVPTFPSM 540 AMSQRSSETA LSADSDMNSN HSIPFNESNS ISDGKEADGP PEKAISGLQR QKRSTTEKNV 600 SFSVLQQYFS GSLKDAAKSI GVCPTTLKRI CRQHGISRWP SRKINKVNRS LKKIQTVLDS 660 VQGVDGGLKF DPATGEFVAA GTVIQECNPE KTLMFSNNNL PVGISEAFNH EKSSAPLASC 720 LDGEDSVVKW DENECSFGGN NNEAARSVLI PSICQEVKKS IVPLNDCSED SKSVAGAASW 780 ICPENATTGS YFRQGDDKWG LNKGNPKVEV ADCHFVSLNS SSLAATDEMD IRKEGDDGID 840 EYNRQHTSSS MTDTSNVSGS RLHGSSSSSE KSMEAKNSRM KTCVDSSSKI TIKATYKENT 900 VRFKFEPSAG CFQVYEEVAK RFKVQNGTFQ LNYLDDEEEW VMLVSDSDLH ECLEIMEYVG 960 TRSVKFQVRD VPFTMGSSSS SNCFLSRNS*

Sequence ? help Back to Top

Protein Sequence Length: 990 aa Download sequence Send to blast

MEYPFSSREK GNGYWVPPRT QMEVGEQFGG NTRNLLFEDP FNYSELMNLD AYGGWCSGSA  60
ATDQMFASSG FFSYPSMSHA SFDSTNSIGQ SSSTYVESGY ALGGMDSSYN CADRTVFRQT  120
DEHFSNTVDS KGVELGVRQH TDGNKQNDTS YLGHLLISRP IGRSLDEKML RALSLFKDLS  180
GEGILAQVWV PIKHGDQYML TTSDQPYLLD QMLLGYREVS RTYTFSAEQK PGSFPGLPGR  240
VFLSRVPEWT SNVIHYSKAE YLRITHAVNH EVRGSIGLPV FQPPEMSCCA VLELVTTKEK  300
PNFHSEMEHV CRALEAVNLR TLARPRFLPQ CLSKNQRAAL AEITDVLRAV CHAHRLPLAL  360
TWIPCNYTEE AENEYIKMRV REGNKSWDGK CVLCIEDTAC YVNEREMQDF VHACVEHYLE  420
GGQGIAGKAL QSNHPFFSAD VKTYDVSDYP LVHHARKFNL NAAVAIRLRS TYTSDDDYIL  480
ELFLPINMKG SLEQQLLLNN LSGTMQRICR TLRTVSDAEI VGERSKFEFQ RVTVPTFPSM  540
AMSQRSSETA LSADSDMNSN HSIPFNESNS ISDGKEADGP PEKAISGLQR QKRSTTEKNV  600
SFSVLQQYFS GSLKDAAKSI GVCPTTLKRI CRQHGISRWP SRKINKVNRS LKKIQTVLDS  660
VQGVDGGLKF DPATGEFVAA GTVIQECNPE KTLMFSNNNL PVGISEAFNH EKSSAPLASC  720
LDGEDSVVKW DENECSFGGN NNEAARSVLI PSICQEVKKS IVPLNDCSED SKSVAGAASW  780
ICPENATTGS YFRQGDDKWG LNKGNPKVEV ADCHFVSLNS SSLAATDEMD IRKEGDDGID  840
EYNRQHTSSS MTDTSNVSGS RLHGSSSSSE KSMEAKNSRM KTCVDSSSKI TIKATYKENT  900
VRFKFEPSAG CFQVYEEVAK RFKVQNGTFQ LNYLDDEEEW VMLVSDSDLH ECLEIMEYVG  960
TRSVKFQVRD VPFTMGSSSS SNCFLSRNS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX622751	4e-48	JX622751.1 Gossypium hirsutum clone NBRI_GE69618 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016684412.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_016684416.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_016684422.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A0D2RDW1	0.0	A0A0D2RDW1_GOSRA; Uncharacterized protein
STRING	EOY04774	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G013500.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]