PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G013500.2 | ||||||||
Common Name | B456_005G013500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Nin-like | ||||||||
Protein Properties | Length: 990aa MW: 110064 Da PI: 5.8015 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.8 | 2.5e-29 | 597 | 647 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++s+++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Gorai.005G013500.2 597 EKNVSFSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 647 89***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.95 | 584 | 667 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.5E-26 | 599 | 647 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.35E-20 | 881 | 972 | No hit | No description |
PROSITE profile | PS51745 | 17.042 | 889 | 971 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.9E-23 | 889 | 971 | No hit | No description |
SMART | SM00666 | 8.8E-19 | 889 | 971 | IPR000270 | PB1 domain |
Pfam | PF00564 | 4.9E-15 | 890 | 970 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 990 aa Download sequence Send to blast |
MEYPFSSREK GNGYWVPPRT QMEVGEQFGG NTRNLLFEDP FNYSELMNLD AYGGWCSGSA 60 ATDQMFASSG FFSYPSMSHA SFDSTNSIGQ SSSTYVESGY ALGGMDSSYN CADRTVFRQT 120 DEHFSNTVDS KGVELGVRQH TDGNKQNDTS YLGHLLISRP IGRSLDEKML RALSLFKDLS 180 GEGILAQVWV PIKHGDQYML TTSDQPYLLD QMLLGYREVS RTYTFSAEQK PGSFPGLPGR 240 VFLSRVPEWT SNVIHYSKAE YLRITHAVNH EVRGSIGLPV FQPPEMSCCA VLELVTTKEK 300 PNFHSEMEHV CRALEAVNLR TLARPRFLPQ CLSKNQRAAL AEITDVLRAV CHAHRLPLAL 360 TWIPCNYTEE AENEYIKMRV REGNKSWDGK CVLCIEDTAC YVNEREMQDF VHACVEHYLE 420 GGQGIAGKAL QSNHPFFSAD VKTYDVSDYP LVHHARKFNL NAAVAIRLRS TYTSDDDYIL 480 ELFLPINMKG SLEQQLLLNN LSGTMQRICR TLRTVSDAEI VGERSKFEFQ RVTVPTFPSM 540 AMSQRSSETA LSADSDMNSN HSIPFNESNS ISDGKEADGP PEKAISGLQR QKRSTTEKNV 600 SFSVLQQYFS GSLKDAAKSI GVCPTTLKRI CRQHGISRWP SRKINKVNRS LKKIQTVLDS 660 VQGVDGGLKF DPATGEFVAA GTVIQECNPE KTLMFSNNNL PVGISEAFNH EKSSAPLASC 720 LDGEDSVVKW DENECSFGGN NNEAARSVLI PSICQEVKKS IVPLNDCSED SKSVAGAASW 780 ICPENATTGS YFRQGDDKWG LNKGNPKVEV ADCHFVSLNS SSLAATDEMD IRKEGDDGID 840 EYNRQHTSSS MTDTSNVSGS RLHGSSSSSE KSMEAKNSRM KTCVDSSSKI TIKATYKENT 900 VRFKFEPSAG CFQVYEEVAK RFKVQNGTFQ LNYLDDEEEW VMLVSDSDLH ECLEIMEYVG 960 TRSVKFQVRD VPFTMGSSSS SNCFLSRNS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX622751 | 4e-48 | JX622751.1 Gossypium hirsutum clone NBRI_GE69618 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016684412.1 | 0.0 | PREDICTED: protein NLP9-like | ||||
Refseq | XP_016684416.1 | 0.0 | PREDICTED: protein NLP9-like | ||||
Refseq | XP_016684422.1 | 0.0 | PREDICTED: protein NLP9-like | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | A0A0D2RDW1 | 0.0 | A0A0D2RDW1_GOSRA; Uncharacterized protein | ||||
STRING | EOY04774 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2299 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43500.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G013500.2 |
Publications ? help Back to Top | |||
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