PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G013500.1
Common NameB456_005G013500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 694aa    MW: 76919.5 Da    PI: 6.3999
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G013500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK93.41.6e-29301351252
              RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         ek++s+++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++
  Gorai.005G013500.1 301 EKNVSFSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 351
                         89***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.95288371IPR003035RWP-RK domain
PfamPF020422.2E-26303351IPR003035RWP-RK domain
SuperFamilySSF542771.44E-20585676No hitNo description
Gene3DG3DSA:3.10.20.2401.2E-23593675No hitNo description
SMARTSM006668.8E-19593675IPR000270PB1 domain
PROSITE profilePS5174517.042593675IPR000270PB1 domain
PfamPF005643.0E-15594674IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MSAVLSSISR MIKKTIIKEA VNLRTLARPR FLPQCLSKNQ RAALAEITDV LRAVCHAHRL  60
PLALTWIPCN YTEEAENEYI KMRVREGNKS WDGKCVLCIE DTACYVNERE MQDFVHACVE  120
HYLEGGQGIA GKALQSNHPF FSADVKTYDV SDYPLVHHAR KFNLNAAVAI RLRSTYTSDD  180
DYILELFLPI NMKGSLEQQL LLNNLSGTMQ RICRTLRTVS DAEIVGERSK FEFQRVTVPT  240
FPSMAMSQRS SETALSADSD MNSNHSIPFN ESNSISDGKE ADGPPEKAIS GLQRQKRSTT  300
EKNVSFSVLQ QYFSGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKINK VNRSLKKIQT  360
VLDSVQGVDG GLKFDPATGE FVAAGTVIQE CNPEKTLMFS NNNLPVGISE AFNHEKSSAP  420
LASCLDGEDS VVKWDENECS FGGNNNEAAR SVLIPSICQE VKKSIVPLND CSEDSKSVAG  480
AASWICPENA TTGSYFRQGD DKWGLNKGNP KVEVADCHFV SLNSSSLAAT DEMDIRKEGD  540
DGIDEYNRQH TSSSMTDTSN VSGSRLHGSS SSSEKSMEAK NSRMKTCVDS SSKITIKATY  600
KENTVRFKFE PSAGCFQVYE EVAKRFKVQN GTFQLNYLDD EEEWVMLVSD SDLHECLEIM  660
EYVGTRSVKF QVRDVPFTMG SSSSSNCFLS RNS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6227513e-48JX622751.1 Gossypium hirsutum clone NBRI_GE69618 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481493.10.0PREDICTED: protein NLP9-like
RefseqXP_012481494.10.0PREDICTED: protein NLP9-like
SwissprotO228640.0NLP8_ARATH; Protein NLP8
TrEMBLA0A0D2R7I50.0A0A0D2R7I5_GOSRA; Uncharacterized protein
STRINGGorai.005G013500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-142Nin-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]