PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G013300.4 | ||||||||
Common Name | B456_005G013300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 320aa MW: 36578 Da PI: 4.9278 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.6 | 5.1e-19 | 7 | 154 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkk.vegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgk................. 72 +G+ F+P+++ l+ yL+++ ++g++ ++++i+ di++++PwdLp +++ +++e +f ++ kya+++ Gorai.005G013300.4 7 KGYGFNPSEQILI-GYLRERtTSGRDYLVQDIIDLShDICSYDPWDLPgcDSITPNDSERFFIYPKTYKYANSTskvigiptkqvpnsdqr 96 799*******999.66666615555566667787767***********5336667899*************77655666665556665555 PP NAM 73 ..rknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 nratk+g Wk +g +v+s+ +++++g+k+ L f +++ p+ kt+ v+h+++l Gorai.005G013300.4 97 qpMINRATKNGKWKVSGVRVNVKSSdeTKQVIGIKTKLYFKHNNCPN--KTSCVLHQFEL 154 4455666***************998777788*********9666666..*********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.135 | 5 | 172 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.63E-19 | 7 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-7 | 7 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MNNLKLKGYG FNPSEQILIG YLRERTTSGR DYLVQDIIDL SHDICSYDPW DLPGCDSITP 60 NDSERFFIYP KTYKYANSTS KVIGIPTKQV PNSDQRQPMI NRATKNGKWK VSGVRVNVKS 120 SDETKQVIGI KTKLYFKHNN CPNKTSCVLH QFELVDIDPC QDKYFLGKVI MKEFKPTNIS 180 SNNLNDRISI PEVRVELGPE PLVETEVTNE YEWTQSEQTN EFITPYLVFD NENSIDDGNE 240 VISNYQSQEW SDLYKLCRFI DQQRAAGAEI EFPNLPPLDV AESSYSTDSV RKRSAMEVER 300 LATGVETELA QQQAKRSRL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016684467.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like isoform X2 | ||||
TrEMBL | A0A0D2RDV7 | 0.0 | A0A0D2RDV7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G013300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 6e-18 | NAC 014 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G013300.4 |
Publications ? help Back to Top | |||
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