PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G288300.1
Common NameB456_004G288300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 362aa    MW: 40208 Da    PI: 7.3635
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G288300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.4e-09125145526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C++f++ G+Ck Gd+C FaHg
  Gorai.004G288300.1 125 ACPDFRK-GICKKGDSCEFAHG 145
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.43772109IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6120146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-5120149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479121147IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-7125145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5125147IPR000571Zinc finger, CCCH-type
SMARTSM0035613155178IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.615155179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMIGEPTRPN PTVKIPAWDP LNDPTSSYSS VNYNCNAPSS PCPVDYLSSL HRYLPSNDFE  60
SSDSLSEDSD LPVDAFSCDH FRMYEFKVRR CARGRSHDWT ECPYAHPGEK ARRRDPRKFH  120
YSGTACPDFR KGICKKGDSC EFAHGVFECW LHPARYRTQP CKDGTSCKRR VCFFAHTPEQ  180
LRLLPQQSPR GNGSSSGDLD YVGSPIRHRF DIVSSPTSIL ASPPLSPPSD SPPLSPSGSF  240
YSVSELAASM RSMQLGKSKM NGAGACSWGM QMGSGYGSPR GSTLRPGFCR SPSTPTRSGL  300
GQFDLWECNN GFEEEPAMER VESGRDLRAR MYAKLSKENS LDRLDPTEPE LDLDWVSELV  360
K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.2800.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5263180.0HQ526318.1 Gossypium herbaceum clone NBRI_D2_431 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477313.10.0PREDICTED: zinc finger CCCH domain-containing protein 23-like
SwissprotO821991e-118C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A0D2RC760.0A0A0D2RC76_GOSRA; Uncharacterized protein
STRINGGorai.004G288300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-117C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  4. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]