PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G285900.1
Common NameB456_004G285900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 218aa    MW: 24087.4 Da    PI: 4.5948
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G285900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-181767155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s+ykGVr +k +g+Wv+eIr p++   r r++lg++++ae+Aaka + a  +l+g
  Gorai.004G285900.1 17 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAAKAFDVALYCLRG 67
                        89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-271775No hitNo description
PfamPF008475.1E-111767IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-201776IPR016177DNA-binding domain
SMARTSM003802.8E-311881IPR001471AP2/ERF domain
PROSITE profilePS5103221.9971875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-281876IPR001471AP2/ERF domain
PRINTSPR003673.1E-91930IPR001471AP2/ERF domain
PRINTSPR003673.1E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MKPTSPVEHV SNSGSSSKYK GVRKRKWGKW VSEIRLPNSR ERIWLGSYDS AEKAAKAFDV  60
ALYCLRGPEA NFNFPKNPPE IVGGRSLTQP EIRAVAARLA NQVDDQDGAD NNNDNNDSSN  120
DNYVRKEQCT SSSSGAGPLQ AEENHEMGWL PFLSMDTDNQ WMSDSRLYSP VSRILSYGGD  180
QLFPPSPPIS PPPIDDNADE YQYCGDGFSP SSSLWDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1517751372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11925KGVRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478052.11e-160PREDICTED: ethylene-responsive transcription factor ERF017-like
TrEMBLA0A0D2R5K71e-159A0A0D2R5K7_GOSRA; Uncharacterized protein
STRINGGorai.004G285900.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-44ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]