PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G285200.1
Common NameB456_004G285200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 233aa    MW: 25727.5 Da    PI: 5.1468
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G285200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.8e-164797155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s++kG r +k +g+Wv+eIr p++   r r++lg+++tae+Aa+a +aa  +l+g
  Gorai.004G285200.1 47 SRFKGARKRK-WGKWVSEIRLPNS---RERIWLGSYDTAEQAARAFDAALFCLRG 97
                        6899999998.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-1947106IPR016177DNA-binding domain
PfamPF008476.3E-94797IPR001471AP2/ERF domain
CDDcd000185.18E-2847107No hitNo description
Gene3DG3DSA:3.30.730.103.8E-2848106IPR001471AP2/ERF domain
PROSITE profilePS5103221.79948105IPR001471AP2/ERF domain
SMARTSM003801.5E-3048111IPR001471AP2/ERF domain
PRINTSPR003675.7E-94960IPR001471AP2/ERF domain
PRINTSPR003675.7E-97187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGCHVAFPIT ALRLRKSKSY APHLCLTEHS PVKQNTGRKP ESERPDSRFK GARKRKWGKW  60
VSEIRLPNSR ERIWLGSYDT AEQAARAFDA ALFCLRGRSA KFNFPDNPPD IAGGGSLTHA  120
EIQAVAARFA NSAPPRTHAE EQSTSGFQTE SPSPSVSVET VRVDGELPVD DGSFLDDLIM  180
GSGHYDSGYG LFPEFDDFSS DFTGLLSVPN IDCEEDDNLA WNLNSEPFLW NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14471051372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5829065e-32JX582906.1 Gossypium hirsutum clone NBRI_GE15829 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477850.11e-148PREDICTED: ethylene-responsive transcription factor ERF017-like, partial
SwissprotQ84QC24e-55ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0D2S7F51e-171A0A0D2S7F5_GOSRA; Uncharacterized protein
STRINGGorai.004G285200.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  4. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]