PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G276500.1
Common NameB456_004G276500, LOC105792854
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 283aa    MW: 32211.6 Da    PI: 8.7456
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G276500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.4e-163582148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W +eEd++l+++v+ +G g+W+++++ +g++R +k+c++rw +yl
  Gorai.004G276500.1 35 RGLWKAEEDLILKNYVETHGEGNWAKVSKLLGLKRGGKSCRLRWKNYL 82
                        788*****************************99************97 PP
2Myb_DNA-binding53.46e-1788133148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++eE++l+++ +++lG++ W++Ia +++ gRt++++k++w+++l
  Gorai.004G276500.1  88 RGAMSKEEEDLIIRMHNLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 133
                         899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.1333082IPR017930Myb domain
SuperFamilySSF466891.76E-2834129IPR009057Homeodomain-like
SMARTSM007174.1E-153484IPR001005SANT/Myb domain
PfamPF002492.2E-153582IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-223689IPR009057Homeodomain-like
CDDcd001671.74E-113882No hitNo description
PROSITE profilePS5129425.86583137IPR017930Myb domain
SMARTSM007178.6E-1787135IPR001005SANT/Myb domain
PfamPF002491.6E-1588133IPR001005SANT/Myb domain
CDDcd001676.63E-1290133No hitNo description
Gene3DG3DSA:1.10.10.609.5E-2490136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MISNFKIHSK FKFSEGKKAA TMEENKREKK TAGKRGLWKA EEDLILKNYV ETHGEGNWAK  60
VSKLLGLKRG GKSCRLRWKN YLRPNIKRGA MSKEEEDLII RMHNLLGNRW SLIAGRLPGR  120
TDNEVKNYWN THLNKKTSVL GKRKGKAIDE SNHQSIPNHQ NNTNTNIAIE NQGGEEPIAP  180
PPAELPMISS PKTTTDDEGS MGLLKVDGLT DNTWMERAVR CFDYDYDNNY EIETPLMMMN  240
KNLNYAHMVF DEEPFTPCLD SFVLFEAFGT DSDLGKTQPF LP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-223513727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477127.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A0D2S7310.0A0A0D2S731_GOSRA; Uncharacterized protein
STRINGGorai.004G276500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-65myb domain protein 82
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]