PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G270400.1 | ||||||||
Common Name | B456_004G270400, LOC105792794 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 290aa MW: 33220.1 Da PI: 6.1114 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.1 | 3.6e-49 | 18 | 143 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPtdeel+ +yL++kv++k+l++ e ik++diyk++P+dLpk+ +e+e+yfF++r +ky+++ r+nr+t sg+Wkatg dk+v+ Gorai.004G270400.1 18 PGFRFHPTDEELIGFYLRRKVDNKSLRI-ELIKQIDIYKYDPSDLPKTSMMGENELYFFCRRGRKYRNSVRPNRVTGSGFWKATGIDKPVF 107 9***************************.89***************87777899************************************* PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++e++glkktLv+y+g+a kg+ktdW+mhe+rl Gorai.004G270400.1 108 SVgSSEAIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 143 9977888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-55 | 9 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.825 | 16 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-25 | 18 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MNMVHGTTTT VDEDVPLPGF RFHPTDEELI GFYLRRKVDN KSLRIELIKQ IDIYKYDPSD 60 LPKTSMMGEN ELYFFCRRGR KYRNSVRPNR VTGSGFWKAT GIDKPVFSVG SSEAIGLKKT 120 LVYYRGSAGK GTKTDWMMHE FRLPNPTLTA QDAEVWTICR IFKRHKKNKQ EWRQGAAKRA 180 STSNGNGVHG YERCSVESSS HENYITFGSQ SIENYDDNDD DDGVDGEMVM DHMKNDGSCR 240 REWYHEEMQC MVSSSSPSSS FSTENDFFTN ANWDELKSVV ELDLDPFLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-48 | 6 | 165 | 1 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-48 | 6 | 165 | 1 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-48 | 6 | 165 | 1 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-48 | 6 | 165 | 1 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-48 | 6 | 165 | 1 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-48 | 6 | 165 | 1 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847240 | 0.0 | KC847240.1 Gossypium hirsutum NAC domain protein NAC63 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314214.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Refseq | XP_012477038.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Refseq | XP_012477039.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Refseq | XP_012477040.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 4e-83 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A0D2R4X7 | 0.0 | A0A0D2R4X7_GOSRA; Uncharacterized protein | ||||
TrEMBL | W6JAQ3 | 0.0 | W6JAQ3_GOSHI; NAC domain protein NAC63 | ||||
STRING | Gorai.004G270400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 7e-85 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G270400.1 |
Entrez Gene | 105792794 |