PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G268500.1
Common NameB456_004G268500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 363aa    MW: 41198.1 Da    PI: 8.5705
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G268500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.33.6e-54281571128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL+ k ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+
  Gorai.004G268500.1  28 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGR 117
                         69****************************.9***************943444443456******************************** PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         dk+++ ++++++g++ktLvfy+grap+g+ktdW+mheyrl
  Gorai.004G268500.1 118 DKAIHLSNSKKIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 157
                         **************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-6017177IPR003441NAC domain
PROSITE profilePS5100558.3628177IPR003441NAC domain
PfamPF023654.0E-2829157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
FITFHSHPSN NKKKDINKMM AGNGQLSVPP GFRFHPTDEE LLYYYLRKKV SYEAIDLDVI  60
REVDLNKLEP WDLKDKCRIG SGPQNEWYFF SHKDKKYPTG TRTNRATTAG FWKATGRDKA  120
IHLSNSKKIG MRKTLVFYTG RAPHGQKTDW IMHEYRLDDD DSDVQEDGWV VCRVFKKKNL  180
IRGNFQADFN QEDNNYNHMK NIASSSAHQM EPRPNNNHLH TLYDYSFDGS MHLPQLFSPE  240
SAAVAASSFI SPLSLNSMDV ECSQNLLRLT SSSGGGGGGG GVGGGGLMQQ DQMRYNGEWS  300
FLDKLLTNHP MSLDHHHHHR HPHQSQAKFI PSLQLDHVGS SSQKFPFQYP GCETAEAMKF  360
SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-512517914167NO APICAL MERISTEM PROTEIN
1ut4_B8e-512517914167NO APICAL MERISTEM PROTEIN
1ut7_A8e-512517914167NO APICAL MERISTEM PROTEIN
1ut7_B8e-512517914167NO APICAL MERISTEM PROTEIN
3swm_A1e-502517917170NAC domain-containing protein 19
3swm_B1e-502517917170NAC domain-containing protein 19
3swm_C1e-502517917170NAC domain-containing protein 19
3swm_D1e-502517917170NAC domain-containing protein 19
3swp_A1e-502517917170NAC domain-containing protein 19
3swp_B1e-502517917170NAC domain-containing protein 19
3swp_C1e-502517917170NAC domain-containing protein 19
3swp_D1e-502517917170NAC domain-containing protein 19
4dul_A8e-512517914167NAC domain-containing protein 19
4dul_B8e-512517914167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at early heart stage onward in all root basal daughter cells resulting from horizontal divisions in the COL progenitors and is later maintained in these cells. Present in root stem cell daughters and accumulates in maturing root cap layers. Detectable from very early stages of lateral root development. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
UniprotTISSUE SPECIFICITY: Accumulates in maturing root cap cells, in both COL and LRC cells. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6171041e-137JX617104.1 Gossypium hirsutum clone NBRI_GE62124 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477007.10.0PREDICTED: protein SOMBRERO-like
SwissprotQ9MA171e-122SMB_ARATH; Protein SOMBRERO
TrEMBLA0A0D2S6S10.0A0A0D2S6S1_GOSRA; Uncharacterized protein (Fragment)
STRINGGorai.004G268500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66532542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-116NAC family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  3. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  4. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  5. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]