PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G263900.1
Common NameB456_004G263900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 672aa    MW: 73082.7 Da    PI: 6.4728
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G263900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23e-11261317155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Gorai.004G263900.1 261 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 317
                         57*******************5444.2455536655.779999**************98 PP
2AP245.91.4e-14362411355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Gorai.004G263900.1 362 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 411
                         9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-8261317IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-15261327IPR016177DNA-binding domain
CDDcd000182.90E-19261327No hitNo description
PROSITE profilePS5103217.411262325IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-12262326IPR001471AP2/ERF domain
SMARTSM003807.1E-23262331IPR001471AP2/ERF domain
PRINTSPR003673.5E-6263274IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17360421IPR016177DNA-binding domain
CDDcd000185.86E-24360421No hitNo description
Gene3DG3DSA:3.30.730.104.2E-18361420IPR001471AP2/ERF domain
PROSITE profilePS5103219.203361419IPR001471AP2/ERF domain
SMARTSM003807.1E-33361425IPR001471AP2/ERF domain
PfamPF008471.9E-9362411IPR001471AP2/ERF domain
PRINTSPR003673.5E-6401421IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MASMNNWLAF SLSPQEPVDH HHQSQTTVSR LGFNSDGISG TDVSGECFDL AGDSSVPSLN  60
LPPPFGILEA FNRNSNQPQD WNMKGSELSM VMGGSSCNTQ EPKLENFLGN HGCHTMYDTT  120
TGQYPLYTAT TARTANGGGD EDNSTNNNTN LTHGASNSNT NSGNSIGLSM IKTWLRNQPA  180
PPQVETKNNG GGGSGGGGAS QSLSLSMSTG GGGGGSGGES SSSDNKKTPP QPPSTGVEIT  240
QTGTNEAVAR KSIDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQS RKGRQGGYDK  300
EEKAARAYDL AALKYWGTTT TTNFPISNYE KELEEMKHMT RQEYVASLRR KSSGFSRGAS  360
MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM  420
SRYDVKSILE SSQLPIGGAA KRLKDVEQAE MAMDMVHRSD GDNINTHLPD GINTYGTSGW  480
PTIAYQQAQP FSMHYPYGQR IWCKQEQDSD PDHAFHDLHQ LQLGSTHNFF QPSVLHNLMA  540
MESSSMEHSS GSNTNSVIYN NTVSDGAGYG GYAIPLGTVI PTDTNQNQSN DFGDNSNNEV  600
KALGYENVYT SSTDPYHSRN MYYLSQQSSS STSQASPCNN WVPTAVPTIA QRSSNMAVCH  660
GTPTFTVWND T*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476927.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A0D2S6H30.0A0A0D2S6H3_GOSRA; Uncharacterized protein
STRINGGorai.004G263900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-145AP2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]