PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G261700.2 | ||||||||
Common Name | B456_004G261700, LOC105792715 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 371aa MW: 40542.7 Da PI: 8.5215 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.1 | 1.2e-12 | 29 | 53 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Gorai.004G261700.2 29 QPECQYYLKTGTCKFGATCKFHHPR 53 799********************96 PP | |||||||
2 | zf-CCCH | 36.9 | 6.3e-12 | 75 | 99 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ Gorai.004G261700.2 75 ETECAYYLRTGQCKFGSTCKFHHPQ 99 578********************97 PP | |||||||
3 | zf-CCCH | 38.2 | 2.4e-12 | 231 | 257 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Gorai.004G261700.2 231 PGQPECQFYMKTGDCKFGAVCRFHHPR 257 5789*********************96 PP | |||||||
4 | zf-CCCH | 41.3 | 2.5e-13 | 277 | 303 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC+f++r+G+Ck+G++CkF+H++ Gorai.004G261700.2 277 PGEPLCDFYSRYGICKFGPSCKFNHPM 303 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.441 | 26 | 54 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-6 | 26 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-10 | 29 | 53 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 32 | 54 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 72 | 99 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 72 | 100 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 72 | 100 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-10 | 75 | 99 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 78 | 98 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 230 | 257 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 230 | 258 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-9 | 232 | 257 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.68E-6 | 234 | 259 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.9E-5 | 236 | 258 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-6 | 274 | 302 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-7 | 276 | 303 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.915 | 276 | 304 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-10 | 278 | 303 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 281 | 301 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MHTCKHLLLP TWAIAAARMK GEFPERVGQP ECQYYLKTGT CKFGATCKFH HPREQAGIAG 60 RVSLNILGYP FRPNETECAY YLRTGQCKFG STCKFHHPQP TNMMISLRGS PIYPTVASPT 120 TPGQQSYPGG ITNWSRASFI PSPRWQGPSS YAPLILPQGM VSVPGWNAYS ASVSSSENLQ 180 QTNGNNQIYG TSNQNESVTG GSQASFSQFR SGSVPIGFYA LPRENVFPER PGQPECQFYM 240 KTGDCKFGAV CRFHHPRERV PPAPDCLLSP IGLPLRPGEP LCDFYSRYGI CKFGPSCKFN 300 HPMGIFTYNY SISSPSGAPV HHLLESSSGT SGLNLSSEGL VESGSTKLRR ISLSENRQLS 360 SSDENIDTEG * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012476903.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X3 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A0D2N3Z7 | 0.0 | A0A0D2N3Z7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G261700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-145 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G261700.2 |
Entrez Gene | 105792715 |
Publications ? help Back to Top | |||
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