PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G261700.2
Common NameB456_004G261700, LOC105792715
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 371aa    MW: 40542.7 Da    PI: 8.5215
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G261700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.11.2e-122953327
                        S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                        +++C+++++tGtCk+G++CkF+H++
  Gorai.004G261700.2 29 QPECQYYLKTGTCKFGATCKFHHPR 53
                        799********************96 PP

2zf-CCCH36.96.3e-127599327
                        S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                        + +C +++rtG+Ck+G++CkF+H++
  Gorai.004G261700.2 75 ETECAYYLRTGQCKFGSTCKFHHPQ 99
                        578********************97 PP

3zf-CCCH38.22.4e-12231257127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+f+++tG Ck+G+ C+F+H++
  Gorai.004G261700.2 231 PGQPECQFYMKTGDCKFGAVCRFHHPR 257
                         5789*********************96 PP

4zf-CCCH41.32.5e-13277303127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++lC+f++r+G+Ck+G++CkF+H++
  Gorai.004G261700.2 277 PGEPLCDFYSRYGICKFGPSCKFNHPM 303
                         589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.4412654IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-62653IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-102953IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-63055IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-53254IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-57299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-672100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.33872100IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-107599IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-47898IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6230257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596230258IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-9232257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6234259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5236258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6274302IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915276304IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10278303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4281301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MHTCKHLLLP TWAIAAARMK GEFPERVGQP ECQYYLKTGT CKFGATCKFH HPREQAGIAG  60
RVSLNILGYP FRPNETECAY YLRTGQCKFG STCKFHHPQP TNMMISLRGS PIYPTVASPT  120
TPGQQSYPGG ITNWSRASFI PSPRWQGPSS YAPLILPQGM VSVPGWNAYS ASVSSSENLQ  180
QTNGNNQIYG TSNQNESVTG GSQASFSQFR SGSVPIGFYA LPRENVFPER PGQPECQFYM  240
KTGDCKFGAV CRFHHPRERV PPAPDCLLSP IGLPLRPGEP LCDFYSRYGI CKFGPSCKFN  300
HPMGIFTYNY SISSPSGAPV HHLLESSSGT SGLNLSSEGL VESGSTKLRR ISLSENRQLS  360
SSDENIDTEG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476903.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X3
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0D2N3Z70.0A0A0D2N3Z7_GOSRA; Uncharacterized protein
STRINGGorai.004G261700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-145zinc finger protein 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]