PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G261700.1
Common NameB456_004G261700, LOC105792715
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 450aa    MW: 49202.4 Da    PI: 8.3266
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G261700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-116187127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C+++ rtG C++G++C+F+H+p
  Gorai.004G261700.1 61 PGEPDCSYYIRTGLCRFGATCRFNHPP 87
                        5789*********************97 PP
2zf-CCCH38.81.6e-12108132327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++++tGtCk+G++CkF+H++
  Gorai.004G261700.1 108 QPECQYYLKTGTCKFGATCKFHHPR 132
                         799********************96 PP
3zf-CCCH36.58e-12154178327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         + +C +++rtG+Ck+G++CkF+H++
  Gorai.004G261700.1 154 ETECAYYLRTGQCKFGSTCKFHHPQ 178
                         578********************97 PP
4zf-CCCH37.83.1e-12310336127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+f+++tG Ck+G+ C+F+H++
  Gorai.004G261700.1 310 PGQPECQFYMKTGDCKFGAVCRFHHPR 336
                         5789*********************96 PP
5zf-CCCH413.2e-13356382127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++lC+f++r+G+Ck+G++CkF+H++
  Gorai.004G261700.1 356 PGEPLCDFYSRYGICKFGPSCKFNHPM 382
                         589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-56087IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5876088IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-86287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-56588IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-46686IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441105133IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6105132IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10108132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6109134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5111133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338151179IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5151178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6151179IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9154178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4157177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596309337IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6309336IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-9311336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5313338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4315337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5353381IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7355382IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915355383IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10357382IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4360380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MTAEWKLLFD AGISMSRIAS AVAVAVTEGA SLSPSLNQDA MWQMNLRSSE TMESGYYPER  60
PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LAIAAARMKG EFPERVGQPE CQYYLKTGTC  120
KFGATCKFHH PREQAGIAGR VSLNILGYPF RPNETECAYY LRTGQCKFGS TCKFHHPQPT  180
NMMISLRGSP IYPTVASPTT PGQQSYPGGI TNWSRASFIP SPRWQGPSSY APLILPQGMV  240
SVPGWNAYSA SVSSSENLQQ TNGNNQIYGT SNQNESVTGG SQASFSQFRS GSVPIGFYAL  300
PRENVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERVP PAPDCLLSPI GLPLRPGEPL  360
CDFYSRYGIC KFGPSCKFNH PMGIFTYNYS ISSPSGAPVH HLLESSSGTS GLNLSSEGLV  420
ESGSTKLRRI SLSENRQLSS SDENIDTEG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476901.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0D2PIP60.0A0A0D2PIP6_GOSRA; Uncharacterized protein
STRINGGorai.004G261700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]