PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G260200.1 | ||||||||
Common Name | B456_004G260200, LOC105792694 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 512aa MW: 58714.9 Da PI: 10.2372 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.6 | 1.2e-14 | 22 | 103 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ l lpk+f++ +g + s t++++ ++g +W+v+l k++g+++l++GWk+F++ Lk g ++F+++g+s+f +v+++f++ Gorai.004G260200.1 22 TQKLPLPKRFVSLYGDD--LSNTVIVKAPTGPEWKVEL--MKCDGEIWLANGWKDFADYFSLKYGNLLIFRYEGHSRF-YVFMIFDQ 103 46689******999988..889****************..*********************************99999.99999986 PP | |||||||
2 | B3 | 52.4 | 9.6e-17 | 211 | 307 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ff v +++++ + +p +fa+++ ++ +++l+d++gr+W + l++ +k + +++GWk F+ +n+L++gD++ F+l + e + Gorai.004G260200.1 211 FFVVNIQPSYITAFHANVPFTFARTYFTW--KEADVILKDRDGRTWPIHLKVYNKYHCTSFGRGWKAFAIDNDLRVGDSCAFELLEGPEIS 299 677788888888888999********744..4558***************87555556789**********************99888888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 ++v++fr+ Gorai.004G260200.1 300 FRVTIFRN 307 9***9997 PP | |||||||
3 | B3 | 58.1 | 1.6e-18 | 413 | 505 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 fkv ++ + l++g ++p +f++eh+++ + ++tl+ + +sW+v++i++ + + ++ GW+ Fv+ n+Lk+gD++vFk++++++ + Gorai.004G260200.1 413 FKVIITTNFLQRGFPSIPERFCDEHMEQ--IPEDVTLKY-KHKSWRVRMIICSDRAG-RFSVGWRAFVQGNKLKVGDVCVFKMIKKTNIVF 499 799999999****99**********866..555688776.779******77444333.4789********************998877777 PP EEEEE- CS B3 93 vvkvfr 98 v++fr Gorai.004G260200.1 500 EVSIFR 505 888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.8E-18 | 8 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-19 | 9 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.084 | 10 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.95E-13 | 13 | 102 | No hit | No description |
SMART | SM01019 | 1.5E-11 | 14 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-12 | 21 | 103 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.86E-22 | 205 | 307 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-23 | 205 | 306 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.91E-19 | 210 | 306 | No hit | No description |
PROSITE profile | PS50863 | 13.987 | 211 | 308 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-14 | 211 | 307 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-15 | 211 | 308 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-22 | 405 | 505 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-19 | 408 | 505 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.98E-18 | 412 | 505 | No hit | No description |
SMART | SM01019 | 1.5E-16 | 412 | 507 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.803 | 412 | 507 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.3E-16 | 413 | 505 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MFISSMNHPK TLHFFRIILS QTQKLPLPKR FVSLYGDDLS NTVIVKAPTG PEWKVELMKC 60 DGEIWLANGW KDFADYFSLK YGNLLIFRYE GHSRFYVFMI FDQTTFEIEY PNGIDNHDVE 120 LQIPDVEEVG SEDVVEIVNN VSPSRKTTEK TRSSPRKRTR MQGATNAKKS EFRMSSRDGS 180 KIGPEQAGGG TSAAQRSSAS SANHFGSEKP FFVVNIQPSY ITAFHANVPF TFARTYFTWK 240 EADVILKDRD GRTWPIHLKV YNKYHCTSFG RGWKAFAIDN DLRVGDSCAF ELLEGPEISF 300 RVTIFRNPED SNDRHTSTRG SKIGHGRHKR ELNARSQIEY DHSSEDEMIR YSKRNKGSQV 360 PRRKIKTRDG KFDEAMQNKT SARRAIQRLP SKGTAIARAL ERVSKLRSAH PLFKVIITTN 420 FLQRGFPSIP ERFCDEHMEQ IPEDVTLKYK HKSWRVRMII CSDRAGRFSV GWRAFVQGNK 480 LKVGDVCVFK MIKKTNIVFE VSIFRDGLTL G* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012476850.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A0D2RAX2 | 0.0 | A0A0D2RAX2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G260200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24389 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-27 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G260200.1 |
Entrez Gene | 105792694 |
Publications ? help Back to Top | |||
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