PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G246700.1
Common NameB456_004G246700, LOC105792584
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 414aa    MW: 44584.1 Da    PI: 6.0368
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G246700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.54.4e-16208263358
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                         + kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L  eN +L k+l  +++++ +
  Gorai.004G246700.1 208 DAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENATLLKRLTDISQKYNE 263
                         689*****************************************999999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.4E-12204261No hitNo description
SMARTSM003389.0E-19206270IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.588208263IPR004827Basic-leucine zipper domain
PfamPF001708.0E-14209262IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.27E-11210260No hitNo description
PROSITE patternPS000360213228IPR004827Basic-leucine zipper domain
PfamPF124981.8E-38277402IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDRVFSVEEI SDHFWPSSSS SATTNSASAD DDNKSGSKMN RSASEWAFQQ FIREEVDKEG  60
EDEGVTEGDL KKKNGTASFN NGCLESNGNN NVLVDSDEYQ AFLKNKLNLA CAAVAMSRAS  120
FVKPQDSAVR ADSGSQASDT PQSVSIATSK GAGDKNGNAL SGFPSVVNGQ KKIGAQVRPS  180
TSGSSREMSE DDEVEGENET MENMDPADAK RVRRMLSNRE SARRSRRRKQ AHLTELETQV  240
SQLRVENATL LKRLTDISQK YNESAVDNRV LKADVETLRA KVKMAEDSVK RITGLSPVFH  300
TSPEISTAGM SSFDGSPSDT STEAAASVQD GPKHPLYQAA ANKPISTHDL RTNNALADIS  360
SVENIQPKSE VSSVSGNKIG RTPSMQRVAS LEHLQKRICG GISSCKPQLN GEK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222229RRSRRRKQ
2224229SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.11650.0flower|seedling| flowering
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5275557e-91HQ527555.1 Gossypium herbaceum clone NBRI_C_EYT27PB01AX7O7 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476676.10.0PREDICTED: light-inducible protein CPRF2-like
SwissprotQ990901e-127CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A0D2R3Q80.0A0A0D2R3Q8_GOSRA; Uncharacterized protein
STRINGGorai.004G246700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68462743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.22e-75bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]