PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G244800.1 | ||||||||
Common Name | B456_004G244800, LOC105792562 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 379aa MW: 42475.9 Da PI: 8.195 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.3 | 8.4e-34 | 44 | 98 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Gorai.004G244800.1 44 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 98 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.014 | 41 | 101 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-31 | 42 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.53E-17 | 43 | 99 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-23 | 44 | 99 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.3E-10 | 46 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.3E-25 | 144 | 191 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MYHHHQHQGK NINSSSRMAV HNERHLFLQG GHGDSGLMLS TDAKPRLKWT PDLHERFIEA 60 VNQLGGADKA TPKTVMKLMG IPGLTLYHLK SHLQKYRLSK NLHGQTNNGS TKIGAVAMAG 120 KRMSEANGSP MNSLSIGPQA NKGIQIGEAL QMQIEVQRRL HEQLEVQRHL QLRIEAQGKY 180 LQSVLEKAQE TLHRQNLGTV GLEAAKLQLS ELVSKVSNQC LNSAFPDLKD LRGLCCQQTQ 240 QNPPNDCSMD SCLTSCEGSQ RDQEIHNNGM CLRTYNTHKD PLMHHQTETK SSENKTMGND 300 DDDERRMFFA DRNCSDLSMS VGLRGGFSQA RNEEHSFLDV GNKRVDSVNR LPYFATKLDL 360 NVDEKHCKQF DLNGLSWS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-21 | 44 | 100 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-21 | 43 | 100 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012476639.1 | 0.0 | PREDICTED: uncharacterized protein LOC105792562 isoform X1 | ||||
Swissprot | Q9SQQ9 | 1e-147 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A0D2S5I2 | 0.0 | A0A0D2S5I2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G244800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3336 | 27 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-150 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G244800.1 |
Entrez Gene | 105792562 |
Publications ? help Back to Top | |||
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