PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G243100.1 | ||||||||
Common Name | B456_004G243100, LOC105792544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 332aa MW: 37193.8 Da PI: 7.6072 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.8 | 2e-13 | 122 | 173 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Gorai.004G243100.1 122 QRMTHIAVERNRRKQMNDYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 173 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-13 | 120 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.73E-13 | 120 | 177 | No hit | No description |
SuperFamily | SSF47459 | 1.09E-16 | 121 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.364 | 121 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-10 | 122 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-9 | 127 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MALEAVIFQQ DLLGYNSNWS HDFGLGKPES KDSFGCFPDN QTPEINHFVH GDYWVSTTPT 60 SSMAAPVPYH HQLQHHCPNS SSDAANVNGL SSSGDPFDAS TTPRPKRRRF KARKNKQEIE 120 NQRMTHIAVE RNRRKQMNDY LSVLRSLMPE SYVQRGDQAS IIGGAINFVK ELEHRLQCLS 180 AEKEVKERSN LTNGGRRSCS SVFDEFFTFP QYSASSKQGD RKDSISMNDQ STVETQSAIA 240 DIEVTMVERH VNLRIRSKKR PAQLLKVVSG LNCMRLSILH LNVTTLDQTV LYSLSVKVEE 300 DCKLTSADDI ATAVNQLLGS IEDALLTRNF P* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 133 | RMTHIAVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012476617.1 | 0.0 | PREDICTED: transcription factor bHLH94-like isoform X1 | ||||
Swissprot | Q9C7T4 | 7e-74 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A0D2R3F3 | 0.0 | A0A0D2R3F3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G243100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14299 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 4e-74 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G243100.1 |
Entrez Gene | 105792544 |
Publications ? help Back to Top | |||
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