PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G234100.1
Common NameB456_004G234100, LOC105793707
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 172aa    MW: 18929.6 Da    PI: 7.2069
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G234100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260142.21.6e-4461051100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vh++FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ l++q++ql+
  Gorai.004G234100.1   6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHRVFGASNVSKMLQELPVQQRADAVSSLVYEANARVRDPVYGCVGAISYLENQVSQLQ 96 
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                          +la++++e
  Gorai.004G234100.1  97 MQLAVAQTE 105
                         ****99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.8425106IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-446103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MGGSSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHR VFGASNVSKM LQELPVQQRA  60
DAVSSLVYEA NARVRDPVYG CVGAISYLEN QVSQLQMQLA VAQTEMLCIR MQQESALPMP  120
MPTQMQQDDK SFLAATNNLD NISQYLNFAS SSSSSNVIQD PSALKRESLW T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-5021237128LOB family transfactor Ramosa2.1
5ly0_B7e-5021237128LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6157831e-114JX615783.1 Gossypium hirsutum clone NBRI_GE59976 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478005.11e-125PREDICTED: LOB domain-containing protein 12-like
RefseqXP_017618917.11e-125PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW33e-74LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A0D2S4Q21e-124A0A0D2S4Q2_GOSRA; Uncharacterized protein
TrEMBLA0A2P5XUA91e-124A0A2P5XUA9_GOSBA; Uncharacterized protein
STRINGGorai.004G234100.11e-124(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.14e-75LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]