PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G231100.1
Common NameB456_004G231100, LOC105792410
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 316aa    MW: 35809.9 Da    PI: 7.9069
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G231100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89e-171462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl
  Gorai.004G231100.1 14 KGPWSPEEDSKLKDYIEKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding39.21.6e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +++eEd  + ++++  G++ W+ Ia+ ++ gRt++++k++w++
  Gorai.004G231100.1  69 GEFSEEEDMVICNLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.175962IPR017930Myb domain
SuperFamilySSF466891.55E-2711109IPR009057Homeodomain-like
SMARTSM007176.2E-131364IPR001005SANT/Myb domain
PfamPF002491.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-241569IPR009057Homeodomain-like
CDDcd001671.37E-91662No hitNo description
PROSITE profilePS5129421.02163117IPR017930Myb domain
SMARTSM007178.2E-1267115IPR001005SANT/Myb domain
PfamPF002493.0E-1169111IPR001005SANT/Myb domain
CDDcd001674.03E-870113No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDSKLKDYIE KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSEEEDMVIC NLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAL  120
SSQSQRKPPP LPIPSSHQTI PPSYKDCSSY YCTPSTRSFA GFEPLSTVQS DLLNHNNTFL  180
ATDSSLNHTT PDSFVSYYPV KEKFLMFGSE PSCSSSDGSS HGKEIKQEDV SNFQGFCAPN  240
GYEDNHKFML SYGNRNQWAE KPSGYHGETP LDYDLEDVKR LIDSSSSNNS CNNNNNNHFF  300
IDESKRQEKV MYYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527230.0KM052723.1 Gossypium hirsutum RAX-like transcription factor RAX4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476444.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A0D2R9B30.0A0A0D2R9B3_GOSRA; Uncharacterized protein
STRINGGorai.004G231100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-77myb domain protein 36
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]