PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G220000.1 | ||||||||
Common Name | B456_004G220000, LOC105792298 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 23382 Da PI: 5.79 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.6 | 5e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrr+C+k+Cv+apyf +eq + +fa++hk+FGasnv+kll++lp +er +a+ ++ yeAear++dP+yG+v++i++lqqq+ +l Gorai.004G220000.1 7 PCGACKFLRRRCVKGCVFAPYFSHEQgATHFAAIHKVFGASNVSKLLTHLPVNERCEAAVTISYEAEARLQDPIYGCVSHIFALQQQVVNL 97 7*************************89*************************************************************** PP DUF260 91 kaelallkee 100 +a+la lke+ Gorai.004G220000.1 98 QAQLACLKEQ 107 *****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.347 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MTGAGSPCGA CKFLRRRCVK GCVFAPYFSH EQGATHFAAI HKVFGASNVS KLLTHLPVNE 60 RCEAAVTISY EAEARLQDPI YGCVSHIFAL QQQVVNLQAQ LACLKEQAAS STFINGTSGS 120 GNPNNVLLQS WFHNNSTMAT PNLNPNLSEN GFLDPNSLVN YESSSVISSS SGEDRSSFNA 180 FGEAVPCSMA SFEEQWSNFQ DVDDLQSMAF GFVHHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-37 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-37 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012476262.1 | 1e-160 | PREDICTED: LOB domain-containing protein 29-like | ||||
Swissprot | Q9M2J7 | 2e-66 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A0D2R230 | 1e-159 | A0A0D2R230_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G220000.1 | 1e-160 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 5e-57 | lateral organ boundaries-domain 29 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G220000.1 |
Entrez Gene | 105792298 |