PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G219900.1 | ||||||||
Common Name | B456_004G219900, LOC105792299 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 155aa MW: 16791.1 Da PI: 8.2323 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.7 | 1.5e-41 | 14 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aC++lrrkC++dC++apyf +eq p+kfa+vhk+FGasnv+kll ++p+++r++a+++++yeA+ar++dPvyG+v++i++lqqq++ l Gorai.004G219900.1 14 PCGACRFLRRKCTHDCIFAPYFGSEQgPAKFAAVHKVFGASNVSKLLLQIPPHDRPEAVATIAYEAQARIQDPVYGCVAHIFTLQQQVAFL 104 7**********************99989*************************************************************** PP DUF260 91 kaelallkee 100 +a+l +++++ Gorai.004G219900.1 105 QAQLMEARAH 114 ****998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.188 | 13 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-40 | 14 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MASSSSSSSG TASPCGACRF LRRKCTHDCI FAPYFGSEQG PAKFAAVHKV FGASNVSKLL 60 LQIPPHDRPE AVATIAYEAQ ARIQDPVYGC VAHIFTLQQQ VAFLQAQLME ARAHLAQNAV 120 TSHNNIENIF ESAQIMMNMQ ENTKQKGVFF PSLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-42 | 4 | 126 | 1 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-42 | 4 | 126 | 1 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During lateral root formation, expressed in the lateral root primordia, and the developing, emerged, and mature lateral roots. {ECO:0000269|PubMed:19717544}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and faintly in shoots. {ECO:0000269|PubMed:12068116}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012476264.1 | 1e-112 | PREDICTED: LOB domain-containing protein 16 | ||||
Swissprot | Q9SLB7 | 6e-62 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A0D2PGC7 | 1e-110 | A0A0D2PGC7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G219900.1 | 1e-111 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-53 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G219900.1 |
Entrez Gene | 105792299 |