PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G215900.3
Common NameB456_004G215900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 665aa    MW: 74260.7 Da    PI: 4.6985
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G215900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-14486532455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Gorai.004G215900.3 486 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 532
                         7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-569191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625482531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-19482550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11486531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.27E-15486536No hitNo description
Gene3DG3DSA:4.10.280.102.0E-19486548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17488537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MAAPPSSRLQ KMLQAAVQSV QWTYSLFWQI CPQQGILIWS DGYYNGAIKT RKTVQPMEVS  60
TEEASLQRSQ QLRELYDSLS SGDTNQPARR PSAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKSACIQTVL CIPILDGVLE LGYTEKVQED  180
LGLVQHVKTF FNDGKAPNPP PPKPALSEHS TSNPAASSDY TRFHSPSIPL VYAAADPPVN  240
ADQGEYNNVD EEEEEEEEDD DDEEGDEEPE SYSAETGRTT QQVPTENTLA VVAAEEPSEL  300
MQLDMSEDIK LGSPDDASNN LDSDFNMLAV SQSGNPTDNQ RRAELFRDES NRRWQMLQEP  360
SCGSLQPLST GPQPVDEMSQ EDTHYSQTVS TILQAQLARW TESPSTVNAA TYSTQSAFAK  420
WTTHSDHHLH SAVVEGTSQW LLKYILFTVP FLHNKYRDEN SPKLRDAAVA AARFRKGTPN  480
EDLSANHVLA ERRRREKLNE RFIILRSLVP FVTKMDKASI LGDTIEYVKQ LRKKIQDLET  540
RNKQMEADND RPRSADSMQR NSSSKDQRSG LTTRSSGPDK KKMRIAEATK QKTAEPAPQT  600
AETSVEVSII ESDALLELQC GYREGLLLDI MQMLREKLRI EITAVQSSLN NGLFTAELRA  660
KVNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-2291929193Transcription factor MYC3
4rqw_B3e-2291929193Transcription factor MYC3
4rs9_A3e-2291929193Transcription factor MYC3
4yz6_A3e-2291929193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1490495ERRRRE
2491496RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6988700.0KP698870.1 Gossypium raimondii basic helix-loop-helix protein 064D (bHLH064D) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476197.10.0PREDICTED: basic helix-loop-helix protein A-like isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0D2S3R40.0A0A0D2S3R4_GOSRA; Uncharacterized protein
STRINGGorai.004G215900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.19e-95bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]