PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G206900.1 | ||||||||
Common Name | B456_004G206900, LOC105792163 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 346aa MW: 36349.7 Da PI: 8.3417 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.9 | 9.1e-35 | 62 | 171 | 2 | 99 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.......sec....eaesssss 81 ++k+++++++hTkv+gR+RR+R++a+ aar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a + +a+s+ s+ Gorai.004G206900.1 62 TVKRSSTKDRHTKVEGRGRRIRIPATSAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAiavsvggT-LkiptTAGSNASN 151 789*************************************************************7777744333330.0332233333333 PP TCP 82 asnsssg........kaaksaakskk 99 ++n++++ k k+k+ Gorai.004G206900.1 152 NKNNNNQidddggatK------KTKR 171 3322222333332221......1111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-28 | 67 | 159 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.011 | 68 | 122 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MDLDDDGGTS DLSTSAGEPN AATDKICESS AFQIKPFKEE PIDSHPPPPI GVVPVSMRPL 60 PTVKRSSTKD RHTKVEGRGR RIRIPATSAA RIFQLTRELG HKSDGETVRW LLEHAEQAII 120 EATGTGTVPA IAVSVGGTLK IPTTAGSNAS NNKNNNNQID DDGGATKKTK RPAKSEFCDI 180 NDGNPFAISN QQQLVTQASG LAPVTPQGLV PVWAVGNTGM MIPANSFWMI PQPTATGAAN 240 GRLSNQQPSS PQIWALSPSV FNVAARPISS IVSTSNQSVC NGLSTSAVNR SSTAVAKKST 300 MAPSGSSSGG KAQMLRDFSL EIYDKQELQL MGRSESHQAA DASCF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012476041.1 | 0.0 | PREDICTED: transcription factor TCP19-like | ||||
TrEMBL | A0A0D2R828 | 0.0 | A0A0D2R828_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G206900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17337 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 4e-62 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G206900.1 |
Entrez Gene | 105792163 |
Publications ? help Back to Top | |||
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