PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G196700.1
Common NameB456_004G196700, LOC105792050
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 213aa    MW: 23544.5 Da    PI: 6.0369
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G196700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.8e-184493255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g
  Gorai.004G196700.1 44 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALTIKG 93
                        69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.43344101IPR001471AP2/ERF domain
SMARTSM003802.9E-3744107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3244102IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-2244102IPR016177DNA-binding domain
PfamPF008472.1E-124493IPR001471AP2/ERF domain
CDDcd000186.02E-3345103No hitNo description
PRINTSPR003677.9E-114556IPR001471AP2/ERF domain
PRINTSPR003677.9E-116783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEVPLDVESK TPFPSSSSSS PPGFKSRKVK IGSESKGKDG KHPTYRGVRM RQWGKWVSEI  60
REPRKKSRIW LGTFPTAEMA ARAHDVAALT IKGNSAYLNF PELTHQLPRP VSASPKDIQA  120
AAAKAATLTY TKSHDVEDDP MLPRSPTTTA TSQEESHLIN DDEAFIDLPD LLLDMNLQID  180
EFWSSVSWKL DDAVETGFGG EEPRASNFIF LQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1935101572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475876.11e-156PREDICTED: ethylene-responsive transcription factor ERF038
SwissprotQ9ZQP38e-55ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A0D2R0V01e-154A0A0D2R0V0_GOSRA; Uncharacterized protein
STRINGGorai.004G196700.11e-155(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.19e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]