PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G186300.3 | ||||||||
Common Name | B456_004G186300, LOC105791940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LSD | ||||||||
Protein Properties | Length: 148aa MW: 15167.6 Da PI: 7.9166 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 46.2 | 7.1e-15 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C+++ Gorai.004G186300.3 28 CSGCRNLLMYPAGATSVCCAVCNAI 52 ***********************97 PP | |||||||
2 | zf-LSD1 | 46.8 | 5e-15 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Gorai.004G186300.3 67 CGGCHTLLMYIRGATSVQCSCCHTV 91 ************************9 PP | |||||||
3 | zf-LSD1 | 41.8 | 1.7e-13 | 105 | 129 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Gorai.004G186300.3 105 CGNCRMLLMYQYGARSVKCAVCNFV 129 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.3E-14 | 25 | 55 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.0E-12 | 28 | 52 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.9E-15 | 64 | 93 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-12 | 67 | 91 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.1E-12 | 102 | 130 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-12 | 105 | 129 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MPVPLAPYPT PPGSYTPPVN GAQSQLVCSG CRNLLMYPAG ATSVCCAVCN AITAVPPPGT 60 EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM LLMYQYGARS 120 VKCAVCNFVT SAGGSASGAA EQKFNNT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.2751 | 1e-120 | seedling |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012475710.1 | 1e-102 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_012475711.1 | 1e-102 | PREDICTED: protein LOL1-like | ||||
Refseq | XP_012475712.1 | 1e-102 | PREDICTED: protein LOL1-like | ||||
Swissprot | Q93ZB1 | 3e-79 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A0D2S255 | 1e-101 | A0A0D2S255_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G186300.1 | 7e-92 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 3e-75 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G186300.3 |
Entrez Gene | 105791940 |
Publications ? help Back to Top | |||
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