PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G183600.1

Common Name

B456_004G183600, LOC105793667

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 328aa MW: 36458.8 Da PI: 6.1781

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G183600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.4	8.1e-19	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l+d+++ +G g+Wkt +++ g++R++k+c++rw +yl Gorai.004G183600.1 16 KGPWIPEEDEKLLDYINTHGHGNWKTLPKHAGLNRCGKSCRLRWANYL 63 79********************************************97 PP
2	Myb_DNA-binding	55.1	1.8e-17	69	113	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+++eE+ l++ ++ lG++ W++Ia +++ gRt++++k++w+++ Gorai.004G183600.1 69 RGRFSEEEERLIISLHSTLGNK-WSKIATYLP-GRTDNEIKNFWNTH 113 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.553	11	63	IPR017930	Myb domain
SuperFamily	SSF46689	1.09E-30	13	110	IPR009057	Homeodomain-like
SMART	SM00717	6.2E-14	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-16	16	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.2E-25	17	70	IPR009057	Homeodomain-like
CDD	cd00167	2.47E-11	18	63	No hit	No description
PROSITE profile	PS51294	27.406	64	118	IPR017930	Myb domain
SMART	SM00717	8.0E-17	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-16	69	113	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-26	71	118	IPR009057	Homeodomain-like
CDD	cd00167	1.30E-12	71	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MGRSPCCSSD DANLNKGPWI PEEDEKLLDY INTHGHGNWK TLPKHAGLNR CGKSCRLRWA 60 NYLRPDIKRG RFSEEEERLI ISLHSTLGNK WSKIATYLPG RTDNEIKNFW NTHIRKKLLN 120 MGLDPNTHKP RTDLNHLLNL TQLICAAQLG SLVNPWESSA PKVQADAAQL LQNLIQTLIT 180 NQLSTISAGL MGSRNSYPYE GLINGTSSLY ADEPAPVPKK FHLMSQTSSD QHQGQGVIEN 240 SWASFEGYES SDISGFLISE LVPESPKTAT TSMNQMGDDK TNTNHGSTMS PDSSIFQAWE 300 KLMDDETDNS FWKDILDLAS SPSSPIL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-30	14	118	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00438	DAP	Transfer from AT4G17785	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012477974.1	0.0	PREDICTED: transcription factor MYB39
TrEMBL	A0A0D2R005	0.0	A0A0D2R005_GOSRA; Uncharacterized protein
STRING	Gorai.004G183600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17785.1	1e-81	myb domain protein 39

Link Out ? help Back to Top
Phytozome	Gorai.004G183600.1
Entrez Gene	105793667

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]