PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G183500.1 | ||||||||
Common Name | B456_004G183500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 34607.8 Da PI: 6.4205 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 66.3 | 5.6e-21 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+d+++ +G g+Wkt +++ g++R++k+c++rw +yl Gorai.004G183500.1 16 KGPWTPEEDEKLLDYINTHGHGNWKTLPKHAGLNRCGKSCRLRWANYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.8 | 5e-18 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+++eE+ l+v+++ lG++ W++Ia +++ gRt++++k++w+++ Gorai.004G183500.1 69 RGRFSEEEERLIVNLHSTLGNK-WSKIATYLP-GRTDNEIKNFWNTH 113 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-26 | 9 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.303 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-32 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-17 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-18 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.08E-13 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 27.345 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-26 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-17 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-16 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-12 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MGRSPCCSSD DANLKKGPWT PEEDEKLLDY INTHGHGNWK TLPKHAGLNR CGKSCRLRWA 60 NYLRPDIKRG RFSEEEERLI VNLHSTLGNK WSKIATYLPG RTDNEIKNFW NTHIRKKLLN 120 MGLDPNTHKP RTDLNHLLNL TQLICAAQLG SLMNPWESSA LKVQADAAQL LQNLIQTLNT 180 NQLSTITAGL MGSQKSYPYE GLINGTSSLY ADEPAPVPQK FHSMSQGYES ADMSDFLISE 240 LVSESPETAT TSMNQMGDDK TNTNHSSTMS PADTSMFQAW EKLMGDETDS SFWKDILDLT 300 SSPSSPIQR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 13 | 118 | 4 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016721290.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
TrEMBL | A0A0D2PEA1 | 0.0 | A0A0D2PEA1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G183500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-80 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G183500.1 |
Publications ? help Back to Top | |||
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