PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G182500.3
Common NameB456_004G182500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 325aa    MW: 36605.9 Da    PI: 9.5285
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G182500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.33e-32193246255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Gorai.004G182500.3 193 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 246
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.49E-15190246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28191246IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23193246IPR006447Myb domain, plants
PfamPF002492.0E-7194245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNIK PTSRGLDSRS SMSSMAKPDN CFELSFSNPR VSDSNSNHFH  60
QLLQNGSATA NCNGNLFQSY HHNQFPHHHN QLQHPLLYQH QHHHQQHQQG LGQEFGFLRP  120
IRGIPVYQNP PPPPPSPPFP FAQQPLDSSL PSSPSYLATT KIGNTSLNPF QSQGLMRSRF  180
MSRSPAKRSM RAPRMRWTTT LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH  240
LQMYRTVKTT DRAAASSGQM DAFENGSSGD TSEDMMFEIQ NPRRSEISVQ QGRSSSSNAH  300
QDKEYHGLWS NSSRLVCFVL HYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16194248458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16194248458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16194248458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16194248458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16194248458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16194248458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16194248458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16194248458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475654.10.0PREDICTED: probable transcription factor KAN2
SwissprotQ9C6162e-67KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A0D2S1X10.0A0A0D2S1X1_GOSRA; Uncharacterized protein
STRINGGorai.004G182500.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-61G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]