PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G173300.1
Common NameB456_004G173300, LOC105791785
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 361aa    MW: 40493.3 Da    PI: 8.5184
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G173300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.7e-06225125
                        --S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                        +k++lC+ffa  G C  G+ C F+H
  Gorai.004G173300.1  2 PKRVLCKFFAH-GACLKGEHCEFSH 25
                        79*****6666.************* PP
2zf-CCCH17.57.6e-063454526
                        --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                        +C ++++ G C yG+rC++ H+
  Gorai.004G173300.1 34 ICTYYQK-GNCFYGSRCRYEHV 54
                        7******.***********997 PP
3zf-CCCH17.85.9e-06142164326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +++C+ fa  G C++G++C+ +Hg
  Gorai.004G173300.1 142 RSICS-FAVAGNCPRGEKCPHIHG 164
                         67899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.9E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-7426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1173056IPR000571Zinc finger, CCCH-type
SMARTSM003560.00113055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.502139166IPR000571Zinc finger, CCCH-type
SMARTSM003560.02141165IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.27E-13197272No hitNo description
Gene3DG3DSA:3.30.40.104.5E-10201267IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00365207267No hitNo description
PfamPF000978.0E-8208265IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.238208266IPR001841Zinc finger, RING-type
SMARTSM001842.8E-7208265IPR001841Zinc finger, RING-type
PROSITE patternPS005180232241IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010314.164295324IPR000571Zinc finger, CCCH-type
SMARTSM003560.25295323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MPKRVLCKFF AHGACLKGEH CEFSHQWKHP PNNICTYYQK GNCFYGSRCR YEHVKASQSD  60
PSASSSSTAP QQSTLSDTMP LAPSKTAFVG SVVSPAASSK VPGCSRACLA PFKQPCDLES  120
GPQDLSDNGE SIEPRRTNPV ERSICSFAVA GNCPRGEKCP HIHGDLCPTC EKHCLHPFRP  180
EEREEHIKMC KKKKKYLDAL KHSQEIECSV CLDRVLSKPT AAERKFGLLS ECDHPFCISC  240
IRNWRSSSPS SGMDVNTALR ACPICRKLSY FVIPSVIWYW TPEEKQRIVD GYKAKLRTIN  300
CKHFNFGNGN CPFGNSCFYK HAYRDGQLEE MALRHLRAED GRTIITKNIR LSNFLGDYAH  360
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475472.10.0PREDICTED: zinc finger CCCH domain-containing protein 69
SwissprotE0X9N41e-164C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A0D2QZ480.0A0A0D2QZ48_GOSRA; Uncharacterized protein
STRINGGorai.004G173300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-134C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]