PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G172100.1

Common Name

B456_004G172100, LOC105791770

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 287aa MW: 31358.9 Da PI: 8.7559

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G172100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.2	1e-31	155	211	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e ekk +k rkpylheSRh hA+rR+Rg+gGrF Gorai.004G172100.1 155 EEPVYVNAKQYHGILRRRQIRAKAELEKKA-IKIRKPYLHESRHLHAMRRARGCGGRF 211 69*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.6E-36	153	214	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.803	154	214	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.0E-26	156	211	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	9.4E-24	157	179	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	159	179	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	9.4E-24	188	211	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MPAKPGNDDQ QIDHGAQSVL QSTAYSEPWW KGVGTNPFGE AASKSPSVEQ LNGSVANGAV 60 HSQAHGDLGN EDGRNRQDRQ HLKHVPSTTP LTLGEHHEPN SQMELVGHSI VLTSYPYSDP 120 QYGGMLTSYG PQMMVSPHLY GMHHARMPLP LQMEEEPVYV NAKQYHGILR RRQIRAKAEL 180 EKKAIKIRKP YLHESRHLHA MRRARGCGGR FLNTKKQGDD VTSPTSQKGM NSDENISTKS 240 SILSGSECVS ANGAGNMNSF YSQQEGNCAR DIMQGNGAQH GAPSIK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-19	155	217	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.3112	0.0	seedling

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097664	2e-53	BT097664.1 Soybean clone JCVI-FLGm-22I24 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475442.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-4-like
Refseq	XP_012475443.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-4-like
Refseq	XP_012475444.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-4-like
TrEMBL	A0A0D2PDJ8	0.0	A0A0D2PDJ8_GOSRA; Uncharacterized protein
STRING	Gorai.004G172100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16019	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	1e-40	nuclear factor Y, subunit A1

Link Out ? help Back to Top
Phytozome	Gorai.004G172100.1
Entrez Gene	105791770

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]