PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G167100.3

Common Name

B456_004G167100, LOC105791712

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 375aa MW: 41648.8 Da PI: 9.9449

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G167100.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.5	1.3e-21	56	147	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W+++e+ aLi+a+r+++ +lrrg+lk+ +W+ev++++ ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++ Gorai.004G167100.3 56 CWSHDETVALIDAYRDKWYTLRRGNLKASHWQEVADAVtrrcPMATPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFVSSWVHFKRMD 146 7***********************************64442233489*********************97799*********8 PP trihelix 87 a 87 a Gorai.004G167100.3 147 A 147 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.5E-23	55	148	No hit	No description
SMART	SM00595	1.9E-13	64	153	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MSNPSSPSPE QGIPSNTSPP PPSETLLSLP APPTSRSTPS ATATVTPNPR RLPPPCWSHD 60 ETVALIDAYR DKWYTLRRGN LKASHWQEVA DAVTRRCPMA TPPKTAVQCR HKMEKLRKRY 120 RTEIQRARSM PVSRFVSSWV HFKRMDAMEK GPNVKADYNS DSPDDENGED EEDGQDQEFY 180 DDGYKNGSLN TRSVQKLYRN GIGNNGGSVS GDGNSGGFRI RIPTGVSIAQ PGPRFYGKID 240 HKYGTNPNPI PNVNANSHPS KGNFGGSGSG SAYGTRILRG FEDMPEKTAA SGKRERERDA 300 VTEMVSAIKV LGDGFVRMEQ MKMEMAREIE TMRMEMEMKR TEVILESQQR IVEAFAKAVS 360 ERKKKPKRMP SPQS*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MSNPSSPSPE QGIPSNTSPP PPSETLLSLP APPTSRSTPS ATATVTPNPR RLPPPCWSHD  60
ETVALIDAYR DKWYTLRRGN LKASHWQEVA DAVTRRCPMA TPPKTAVQCR HKMEKLRKRY  120
RTEIQRARSM PVSRFVSSWV HFKRMDAMEK GPNVKADYNS DSPDDENGED EEDGQDQEFY  180
DDGYKNGSLN TRSVQKLYRN GIGNNGGSVS GDGNSGGFRI RIPTGVSIAQ PGPRFYGKID  240
HKYGTNPNPI PNVNANSHPS KGNFGGSGSG SAYGTRILRG FEDMPEKTAA SGKRERERDA  300
VTEMVSAIKV LGDGFVRMEQ MKMEMAREIE TMRMEMEMKR TEVILESQQR IVEAFAKAVS  360
ERKKKPKRMP SPQS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012475374.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A0D2S0Z5	0.0	A0A0D2S0Z5_GOSRA; Uncharacterized protein
STRING	Gorai.004G167100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-84	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G167100.3
Entrez Gene	105791712

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]