PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G153100.5
Common NameB456_004G153100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 323aa    MW: 34603.5 Da    PI: 8.3961
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G153100.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.27.6e-23205267163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN +L++e+++l+++++kl+ e+
  Gorai.004G153100.5 205 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLEN 267
                         89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.3E-17150IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.9E-2867188No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-19199264No hitNo description
SMARTSM003384.0E-22205269IPR004827Basic-leucine zipper domain
PfamPF001703.4E-21205267IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.748207270IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.94E-11208264No hitNo description
CDDcd147022.75E-22210259No hitNo description
PROSITE patternPS000360212227IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MPPYYNSAVA SGHAPPPYMW GPPQPMMPPY GAPYATIYSH GGVYAHPAVP ITAAPVEAPT  60
KSSGNTERGS TKKMKGFDGL AMSIGNGTAE NDEGAAEPRL SQSVETEGST DGSDGNTTGT  120
DQSRRKRSRE GTPTIGGDGK TEAKSNAVAV AEVTTTISPK PIGTVLSPGM TTALELRNPS  180
SMNAKSSPTN VPCGVMPPEV WMQNERELKR ERRKQSNRES ARRSRLRKQA ETEELARKVE  240
SLTAENATLR SEINQLTEKS EKLRLENATL VEGLKNAQLG HTQENITNKN EDKEGEMYEK  300
KSGAKLHQLL DASPRTDAVA AS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221227RRSRLRK
2221228RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475105.10.0PREDICTED: common plant regulatory factor 1-like isoform X2
SwissprotQ990891e-113CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A0D2R5850.0A0A0D2R585_GOSRA; Uncharacterized protein
STRINGGorai.004G153100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.12e-73G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]