PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G153100.2
Common NameB456_004G153100, LOC105791547
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 367aa    MW: 39370.7 Da    PI: 7.7381
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G153100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.99.3e-23249311163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN +L++e+++l+++++kl+ e+
  Gorai.004G153100.2 249 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLEN 311
                         89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.2E-34193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.2E-26110232No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-19243308No hitNo description
PfamPF001704.2E-21249311IPR004827Basic-leucine zipper domain
SMARTSM003384.0E-22249313IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.748251314IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.31E-11252308No hitNo description
CDDcd147025.76E-23254303No hitNo description
PROSITE patternPS000360256271IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGNNDEGKSK SDKSSSPVPT DQANIHVYPD WAAMQAYYGP RVTMPPYYNS AVASGHAPPP  60
YMWGPPQPMM PPYGAPYATI YSHGGVYAHP AVPITAAPVE APTKSSGNTE RGSTKKMKGF  120
DGLAMSIGNG TAENDEGAAE PRLSQSVETE GSTDGSDGNT TGTDQSRRKR SREGTPTIAG  180
GDGKTEAKSN AVAVAEVTTT ISPKPIGTVL SPGMTTALEL RNPSSMNAKS SPTNVPCGVM  240
PPEVWMQNER ELKRERRKQS NRESARRSRL RKQAETEELA RKVESLTAEN ATLRSEINQL  300
TEKSEKLRLE NATLVEGLKN AQLGHTQENI TNKNEDKEGE MYEKKSGAKL HQLLDASPRT  360
DAVAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265271RRSRLRK
2265272RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475102.10.0PREDICTED: common plant regulatory factor 1-like isoform X1
RefseqXP_012475103.10.0PREDICTED: common plant regulatory factor 1-like isoform X1
RefseqXP_012475104.10.0PREDICTED: common plant regulatory factor 1-like isoform X1
SwissprotQ990891e-130CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A0D2PCD20.0A0A0D2PCD2_GOSRA; Uncharacterized protein
STRINGGorai.004G153100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.12e-92G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]