PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G153100.1 | ||||||||
Common Name | B456_004G153100, LOC105791547 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 367aa MW: 39370.7 Da PI: 7.7381 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 71.9 | 9.3e-23 | 249 | 311 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN +L++e+++l+++++kl+ e+ Gorai.004G153100.1 249 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENATLRSEINQLTEKSEKLRLEN 311 89*********************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.2E-34 | 1 | 93 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.2E-26 | 110 | 232 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.6E-19 | 243 | 308 | No hit | No description |
Pfam | PF00170 | 4.2E-21 | 249 | 311 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 4.0E-22 | 249 | 313 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.748 | 251 | 314 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.31E-11 | 252 | 308 | No hit | No description |
CDD | cd14702 | 5.76E-23 | 254 | 303 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 256 | 271 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MGNNDEGKSK SDKSSSPVPT DQANIHVYPD WAAMQAYYGP RVTMPPYYNS AVASGHAPPP 60 YMWGPPQPMM PPYGAPYATI YSHGGVYAHP AVPITAAPVE APTKSSGNTE RGSTKKMKGF 120 DGLAMSIGNG TAENDEGAAE PRLSQSVETE GSTDGSDGNT TGTDQSRRKR SREGTPTIAG 180 GDGKTEAKSN AVAVAEVTTT ISPKPIGTVL SPGMTTALEL RNPSSMNAKS SPTNVPCGVM 240 PPEVWMQNER ELKRERRKQS NRESARRSRL RKQAETEELA RKVESLTAEN ATLRSEINQL 300 TEKSEKLRLE NATLVEGLKN AQLGHTQENI TNKNEDKEGE MYEKKSGAKL HQLLDASPRT 360 DAVAAS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 265 | 271 | RRSRLRK |
2 | 265 | 272 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012475102.1 | 0.0 | PREDICTED: common plant regulatory factor 1-like isoform X1 | ||||
Refseq | XP_012475103.1 | 0.0 | PREDICTED: common plant regulatory factor 1-like isoform X1 | ||||
Refseq | XP_012475104.1 | 0.0 | PREDICTED: common plant regulatory factor 1-like isoform X1 | ||||
Swissprot | Q99089 | 1e-130 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | A0A0D2PCD2 | 0.0 | A0A0D2PCD2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G153100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3571 | 26 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 2e-92 | G-box binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G153100.1 |
Entrez Gene | 105791547 |
Publications ? help Back to Top | |||
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