PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G152900.1
Common NameB456_004G152900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 706aa    MW: 82675.1 Da    PI: 8.1715
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G152900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.25.4e-08461201190
                FAR1  11 GFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                         G+ ++++  +k k+ng +   tf C   g+ + ++++     +++ +++t+Ck +l+ +  k  + w +  +  +HnH+la
  Gorai.004G152900.1  46 GYIIVTR-RSKAKENGVVFYVTFICDHGGEYKFKESS-----KKSGTKKTNCKFRLVGSYLKqYDGWTLRVICDQHNHPLA 120
                         5555554.4556799**************99987776.....88999*********999877699**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-546120IPR004330FAR1 DNA binding domain
PfamPF105513.4E-26220315IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MSNFYGSNLN EGNEISMVTS PVFTDRVFES REELMQWVQN TTFSLGYIIV TRRSKAKENG  60
VVFYVTFICD HGGEYKFKES SKKSGTKKTN CKFRLVGSYL KQYDGWTLRV ICDQHNHPLA  120
QLMEGHAYAR QLKEKEKKLL VDLTSKNVTP RDILSTLNEQ DENNVSTLKT IYNARQKLRL  180
SQNVGKILIQ FSVNNISNEL ENLFFIHPRS LDIWRAFPHV LIVDATYKTN KYDLPFVQIG  240
GLTSTNKTFS IAFAFIINEK EENYNWALTC LKLTLEECMY PRVSVMDREL ALMNACQQIF  300
PDATRLLCRW HITENIKKHC RQSIKSQHEW DSFRAMWTVL VESPTWILYT ENYRKLQSIL  360
SEYPGVLKYL DQVWLSKYKE MFVSVWIYRH LKFGERTTNR VESQHVKLKK YLCAKNSSLD  420
KFVGCIDQIV KSQLTSIYES FEKSRIVLKH IHNLPCFRLL WELNKKPARH SSYVIEIPDL  480
NQEPSEQVSD FIDLNQMPES CDTHPLMKEI PNMFHPYITH IQDVKGDRNC RFRAISVCLG  540
YGEDQWLYVR HQLLDELLSS YDVYARVFTD GIDELRNSLC FSQSPAPAEH WMVMPMIGVL  600
IANRFGVILN YLPKRGDITF FPLWRGPEHF QYHHAITIAH IYDNHNVMVQ LEGDYPMPTI  660
SAYWIRHIAL STAGWQTMYM SCLEFYRQIK PCNLKTPVIT IEDYC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694312.10.0PREDICTED: uncharacterized protein LOC107910899
RefseqXP_023749760.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0D2PCC80.0A0A0D2PCC8_GOSRA; Uncharacterized protein
STRINGGorai.004G152900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-12FAR1-related sequence 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]