PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G151300.1

Common Name

B456_004G151300, LOC105793649

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 168aa MW: 18739.6 Da PI: 7.9913

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G151300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.2	3.1e-39	17	115	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaC++lrr+C ++C+lapyfp ++p kfa vhk+FGasnv+kl++ ++e++reda+++lvyeA+ar+rdPvyG++g+i++lq+ ++ lk Gorai.004G151300.1 17 PCAACRMLRRRCDSNCILAPYFPGDEPDKFAGVHKVFGASNVIKLIQMVEETNREDAVKALVYEARARLRDPVYGSTGTIFQLQKMVQDLK 107 7****************************************************************************************** PP DUF260 92 aelallke 99 +l+++++ Gorai.004G151300.1 108 LQLKSTNA 115 99998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.548	16	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-39	17	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MGSQTLARLG IRTHHQPCAA CRMLRRRCDS NCILAPYFPG DEPDKFAGVH KVFGASNVIK 60 LIQMVEETNR EDAVKALVYE ARARLRDPVY GSTGTIFQLQ KMVQDLKLQL KSTNARVLEL 120 QQQKDQLLGI FMNVDHLDVL SSVDHGPSFS LDYEDSMASN LLIGKPH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-36	17	118	11	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-36	17	118	11	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012477966.1	1e-123	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-42	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A0D2MYN2	1e-121	A0A0D2MYN2_GOSRA; Uncharacterized protein
STRING	Gorai.004G151300.1	1e-122	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24960	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	7e-45	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Gorai.004G151300.1
Entrez Gene	105793649

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]