PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G150800.1
Common NameB456_004G150800, LOC105791527
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 275aa    MW: 30925.1 Da    PI: 9.6552
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G150800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+ Ed ll+++v+ +G g+W++ +++ g+ R++k+c++rw +yl
  Gorai.004G150800.1 14 RGPWTPREDTLLINYVQTHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                        89******************************99************97 PP
2Myb_DNA-binding53.45.7e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ +t+Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w++yl
  Gorai.004G150800.1  67 RGNISTDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 112
                         7899******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.737961IPR017930Myb domain
SuperFamilySSF466892.71E-3011108IPR009057Homeodomain-like
SMARTSM007172.4E-131363IPR001005SANT/Myb domain
PfamPF002498.2E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231568IPR009057Homeodomain-like
CDDcd001674.35E-111661No hitNo description
PROSITE profilePS5129425.84362116IPR017930Myb domain
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002492.8E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2569116IPR009057Homeodomain-like
CDDcd001671.33E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRAPCCTKV GLHRGPWTPR EDTLLINYVQ THGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI STDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT YLSKRLLSQG  120
IDPNTHKKLP KPVVQQVSKR KNSRGSNNKQ NPKKAKTTLE PAVIPKVHLP KPSKATSIYF  180
PRNDSFDQCN TFSTVCSSQG EEGIGTQVIQ GPWSEYVSHG ENGTGFLSES GCHPRVPSSE  240
GDNSLEKLYE EYLQFLKANE DQLQLDAFAE SLLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475066.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A0D2R5500.0A0A0D2R550_GOSRA; Uncharacterized protein
STRINGGorai.004G150800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.17e-71myb domain protein 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]