PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G149000.7 | ||||||||
Common Name | B456_004G149000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 442aa MW: 50511.6 Da PI: 6.1741 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.9 | 8.1e-36 | 11 | 132 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +G+rFhPtd+elv++yL +k+ +++ + ++ikev +++ +Pw+Lp +k+++ ++ wyfFs+r + kr +r+t++g+Wk tgk + Gorai.004G149000.7 11 VGYRFHPTDKELVDHYLWNKILDRDSLV-QAIKEVdSLFNKDPWELPgwSKIQSADQVWYFFSRRGDN----KRVKRTTDKGFWKVTGKPR 96 7***********************9777.88****5599********6559999999*******9875....69***************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+ ++ kk+Lvfy+gr+p+++ t Wv+hey++ Gorai.004G149000.7 97 KVKG--KKGCAAKKSLVFYEGRTPNAKWTPWVIHEYTF 132 **87..66799*************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-37 | 7 | 139 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.655 | 9 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-21 | 11 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MSSIDGNSHI VGYRFHPTDK ELVDHYLWNK ILDRDSLVQA IKEVDSLFNK DPWELPGWSK 60 IQSADQVWYF FSRRGDNKRV KRTTDKGFWK VTGKPRKVKG KKGCAAKKSL VFYEGRTPNA 120 KWTPWVIHEY TFTSTLLDNR KKEDETANAS SSESCQPSLV ADEEIPDNST MFNPDEMLDT 180 LKERDREHEL EVDEQQPPSC LEFTHLQDFN CDGLPHLSKE ENDDESWIGY LVDDDEFNPM 240 NLILEVDASA TCPGEPSRKR SRCEAGVLCG AIEKEECQPM AVSNSMMLDA HGDSKKHQAL 300 AMVNAPNVTS SSVKQDPHGR DRMVSLNNES RELDIPDVES VVDPHSIVRA TRFYNPYYQK 360 LGEQEDDAKR INKRGKFCRK IASQDKAIDV KQHATAVNLP IIMESNGKRK TAEHSYRHMR 420 LQMHLNELSD SDKKSFLHVH I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-20 | 12 | 130 | 18 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012475044.1 | 0.0 | PREDICTED: NAC domain-containing protein 1-like isoform X2 | ||||
TrEMBL | A0A0D2PC90 | 0.0 | A0A0D2PC90_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G149000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01550.1 | 7e-31 | NAC domain containing protein 69 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G149000.7 |
Publications ? help Back to Top | |||
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