PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G149000.3
Common NameB456_004G149000, LOC105791509
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 451aa    MW: 51543.9 Da    PI: 6.2742
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G149000.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.98.4e-36111323128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         +G+rFhPtd+elv++yL +k+ +++  + ++ikev  +++ +Pw+Lp  +k+++ ++ wyfFs+r  +    kr +r+t++g+Wk tgk +
  Gorai.004G149000.3  11 VGYRFHPTDKELVDHYLWNKILDRDSLV-QAIKEVdSLFNKDPWELPgwSKIQSADQVWYFFSRRGDN----KRVKRTTDKGFWKVTGKPR 96 
                         7***********************9777.88****5599********6559999999*******9875....69***************** PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +v+   ++    kk+Lvfy+gr+p+++ t Wv+hey++
  Gorai.004G149000.3  97 KVKG--KKGCAAKKSLVFYEGRTPNAKWTPWVIHEYTF 132
                         **87..66799*************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-387151IPR003441NAC domain
PROSITE profilePS5100540.5549151IPR003441NAC domain
PfamPF023651.4E-2111131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSSIDGNSHI VGYRFHPTDK ELVDHYLWNK ILDRDSLVQA IKEVDSLFNK DPWELPGWSK  60
IQSADQVWYF FSRRGDNKRV KRTTDKGFWK VTGKPRKVKG KKGCAAKKSL VFYEGRTPNA  120
KWTPWVIHEY TFTSTLLDNR EGIFLCKLKK KEDETANASS SESCQPSLVA DEEIPDNSTM  180
FNPDEMLDTL KERDREHELE VDEQQPPSCL EFTHLQDFNC DGLPHLSKEE NDDESWIGYL  240
VDDDEFNPMN LILEVDASAT CPGEPSRKRS RCEAGVLCGA IEKEECQPMA VSNSMMLDAH  300
GDSKKHQALA MVNAPNVTSS SVKQDPHGRD RMVSLNNESR ELDIPDVESV VDPHSIVRAT  360
RFYNPYYQKL GEQEDDAKRI NKRGKFCRKI ASQDKAIDVK QHATAVNLPI IMESNGKRKT  420
AEHSYRHMRL QMHLNELSDS DKKSFLHVHI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-201215418171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475044.10.0PREDICTED: NAC domain-containing protein 1-like isoform X2
TrEMBLA0A0D2R5390.0A0A0D2R539_GOSRA; Uncharacterized protein
STRINGGorai.004G149000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.17e-33NAC domain containing protein 69
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]