PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G140600.1
Common NameB456_004G140600, LOC105791423
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 354aa    MW: 40057.7 Da    PI: 6.0508
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G140600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.93.6e-071153339
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         r C+ +++  + l+C+ ++  lC +C  e H+       H++
  Gorai.004G140600.1 11 RRLCDYCNQSTALLYCRADSAKLCFSCDREVHSAnqlftkHSR 53
                        689******99*********************65777777776 PP
2zf-B_box284.7e-095395242
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg...Htvvpl 42
                        + + C+ ++e +++lfCe+ q+ +C +C  e H +   H+++p+
  Gorai.004G140600.1 53 RSQLCDACDESPASLFCETEQSVFCSNCDWERH-RcslHNRRPV 95
                        5689*****************************.6599998875 PP
3CCT58.91.8e-20309351143
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                         Re a++RYkeK+ktR+++K++rYesRKa+AesR R+KGrF+k 
  Gorai.004G140600.1 309 RETAISRYKEKKKTRRYDKHVRYESRKARAESRTRIKGRFAKV 351
                         99***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.793956IPR000315B-box-type zinc finger
SMARTSM003363.5E-13956IPR000315B-box-type zinc finger
PfamPF006439.1E-61154IPR000315B-box-type zinc finger
CDDcd000217.42E-61244No hitNo description
PROSITE profilePS5011910.315295IPR000315B-box-type zinc finger
PfamPF006439.0E-75495IPR000315B-box-type zinc finger
CDDcd000211.11E-75695No hitNo description
SMARTSM003360.155795IPR000315B-box-type zinc finger
PfamPF062031.1E-15309351IPR010402CCT domain
PROSITE profilePS5101714.803309351IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSDESHTQIQ RRLCDYCNQS TALLYCRADS AKLCFSCDRE VHSANQLFTK HSRSQLCDAC  60
DESPASLFCE TEQSVFCSNC DWERHRCSLH NRRPVEVFTG CPSVSELLSF LGIEDLGNDK  120
ASCWSEDDGF LDFLTWECPL ISGFDGVIVP NDMDHGFKAT DVPPLPKNRN SSCGQHKEEI  180
FHQLHELAKS DPTLTFQKID LQSLIPETDH FQPASMQPSC NNDADPVSCP ALETSPLQCL  240
KFNDNVEITN QALLYTEENA RVANTHVDCS RNIDVNDGPE DQQMKPQTGV GTISALPKVS  300
VHELNSQERE TAISRYKEKK KTRRYDKHVR YESRKARAES RTRIKGRFAK VKR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474942.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A0D2R4H80.0A0A0D2R4H8_GOSRA; Uncharacterized protein
STRINGGorai.004G140600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-94B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]