PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G133800.1
Common NameB456_004G133800, LOC105791351
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 299aa    MW: 33303.6 Da    PI: 8.6291
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G133800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-18114164256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Gorai.004G133800.1 114 QYRGVRQRH-WGKWVAEIRLPQN---RMRIWLGTYETAEAAAYAYDRAAYKLRGE 164
                         7*******9.**********954...59*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.17E-15113172No hitNo description
SuperFamilySSF541716.15E-22114171IPR016177DNA-binding domain
PfamPF008472.6E-12114164IPR001471AP2/ERF domain
SMARTSM003805.8E-35114177IPR001471AP2/ERF domain
PROSITE profilePS5103223.011114171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-30114172IPR001471AP2/ERF domain
PRINTSPR003675.2E-10115126IPR001471AP2/ERF domain
PRINTSPR003675.2E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MQEINHPLGF NDIVNIGSSL SQLILSGGSN TLDSIFSHCA PSTTTTSTAI TTNCIYEPIG  60
SSVYLRQREL LQKFSQENNG NASFSCNSLM NRIPSYPNPA STSNFYLSPE KKKQYRGVRQ  120
RHWGKWVAEI RLPQNRMRIW LGTYETAEAA AYAYDRAAYK LRGEYARLNF ENIKDPSKLG  180
FGDGARLSAL KNSVDAKIQA ICQKVKRERA KKKAKKDRPA EAEKTVKVTE SCSSSSSLSP  240
VVFSDSVSDG GFWRCENSPS SVSNDYPMMM AEEPQFEDCL LARMPSFDAE LIWDILAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20113170159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-20111170262ATERF1
3gcc_A5e-20111170262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474845.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W21e-66ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A0D2MXT70.0A0A0D2MXT7_GOSRA; Uncharacterized protein
STRINGGorai.004G133800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.16e-45ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]