PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G131700.2

Common Name

B456_004G131700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 960aa MW: 105979 Da PI: 5.8541

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G131700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.3	1.5e-28	580	630	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF +++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Gorai.004G131700.2 580 EKSISLEVLQQYFTGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 630 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.006	565	650	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-25	583	630	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.71E-22	857	947	No hit	No description
SMART	SM00666	4.2E-23	863	945	IPR000270	PB1 domain
PROSITE profile	PS51745	22.172	863	945	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.0E-25	863	945	No hit	No description
CDD	cd06407	1.85E-37	864	944	No hit	No description
Pfam	PF00564	1.6E-15	864	944	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence Send to blast
MCEPEEDNAC PFPPKQLQPQ HQGIMDFDDL DLQSSWPFDQ LTFLSNPTSP FVTSSSSEQP 60 CSPLWAFSDD DKLGSAAAAG YNLFVTCTPN PVNENAKEEN DNRGLPSLFL GLLPLENPDS 120 YCVIKERMTR ALRYFKESTE QHVLAQVWAP VKDGGRYVLT TLGQPFVLDP HSSGLHQYRM 180 VSLMYMFSVD GESDVQLGLP GRVFRQKLPE WTPNVQYYSS REYSRLNHAL HYNVQGTLAL 240 PIFEPSGQSC VGVLELIMTS QKINYAPEVD KVCKALEAVN LKSSEILGYP STQICNESRQ 300 NALAEILEIL TVVCETHKLP LAQTWVPCRH RKVLVHGGGL KKSCTSFDGS CMGQVCMSTT 360 DVAFYVVDAH MWGFRDACLE HHLQKGQGVA GRAFLSLNSC FCSDITQFCK TEYPLVHYAR 420 MFKLTSCFAI CLRSTYTRDD DYVLEFFLPP AIADCNEQHA LLGSILTTMK QHFQSLMVAS 480 GAELEEDEGS IEIIGASSEE RFVTRLECIP IPPPVKSPPK NNTSPNKGEL QLDSSKQQLT 540 VNFDPSAHGG RVVASGSHNL DCPLQNKDLK KPERKRGKTE KSISLEVLQQ YFTGSLKNAA 600 KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLTKLKHV IESVHGLNGS NQQNSPNSRP 660 FEHKGEKNDS PTCLTPQSNG QVVVEDQLLG GTTLSPEPFP QQNGLSSHFD KGVKRSRRGS 720 TSREESAGTP ISYSSCQGSL GIENAATKAS FGSIHDQCLK AHGSPELAFQ QLLGEPNISA 780 MFSMPKVLVA AELEEPIGGM LVEAAGSSKD LRNLCPIADI GVNEQFPESS WTPPPCSDLA 840 LKQAMSTFTQ PTPRVTAREE TKSVTIKATY REDIIRFRIS MSSGILELKE EVANRLKLEV 900 GACDIKYLDD DNEWVLMACD ADLEECIDVS RSSGNNIIRL CIHDTMANLE SSCESTGEL*

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence Send to blast

MCEPEEDNAC PFPPKQLQPQ HQGIMDFDDL DLQSSWPFDQ LTFLSNPTSP FVTSSSSEQP  60
CSPLWAFSDD DKLGSAAAAG YNLFVTCTPN PVNENAKEEN DNRGLPSLFL GLLPLENPDS  120
YCVIKERMTR ALRYFKESTE QHVLAQVWAP VKDGGRYVLT TLGQPFVLDP HSSGLHQYRM  180
VSLMYMFSVD GESDVQLGLP GRVFRQKLPE WTPNVQYYSS REYSRLNHAL HYNVQGTLAL  240
PIFEPSGQSC VGVLELIMTS QKINYAPEVD KVCKALEAVN LKSSEILGYP STQICNESRQ  300
NALAEILEIL TVVCETHKLP LAQTWVPCRH RKVLVHGGGL KKSCTSFDGS CMGQVCMSTT  360
DVAFYVVDAH MWGFRDACLE HHLQKGQGVA GRAFLSLNSC FCSDITQFCK TEYPLVHYAR  420
MFKLTSCFAI CLRSTYTRDD DYVLEFFLPP AIADCNEQHA LLGSILTTMK QHFQSLMVAS  480
GAELEEDEGS IEIIGASSEE RFVTRLECIP IPPPVKSPPK NNTSPNKGEL QLDSSKQQLT  540
VNFDPSAHGG RVVASGSHNL DCPLQNKDLK KPERKRGKTE KSISLEVLQQ YFTGSLKNAA  600
KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLTKLKHV IESVHGLNGS NQQNSPNSRP  660
FEHKGEKNDS PTCLTPQSNG QVVVEDQLLG GTTLSPEPFP QQNGLSSHFD KGVKRSRRGS  720
TSREESAGTP ISYSSCQGSL GIENAATKAS FGSIHDQCLK AHGSPELAFQ QLLGEPNISA  780
MFSMPKVLVA AELEEPIGGM LVEAAGSSKD LRNLCPIADI GVNEQFPESS WTPPPCSDLA  840
LKQAMSTFTQ PTPRVTAREE TKSVTIKATY REDIIRFRIS MSSGILELKE EVANRLKLEV  900
GACDIKYLDD DNEWVLMACD ADLEECIDVS RSSGNNIIRL CIHDTMANLE SSCESTGEL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016694700.1	0.0	PREDICTED: protein NLP6-like isoform X2
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A0D2R3Y9	0.0	A0A0D2R3Y9_GOSRA; Uncharacterized protein
STRING	Gorai.004G131700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Gorai.004G131700.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]