PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G130500.3

Common Name

B456_004G130500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 680aa MW: 73958.5 Da PI: 5.9166

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G130500.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.7e-05	578	616	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLr ++P++ +k ls Le++++Y+ Lq Gorai.004G130500.3 578 RQLIQDRIKELRGIIPHS----GKQLSIDHLLERTIKYLLFLQ 616 67799**********9....777*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.9E-7	10	48	IPR025610	Transcription factor MYC/MYB N-terminal
Pfam	PF14215	2.8E-15	59	149	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	9.858	565	615	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-4	578	625	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-5	578	621	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MGEVAMGSAL KQTLKNLCCS NGWCYGVFWR FDPRNSMLLT MEDAYYEQKM GPLVDKMLLK 60 FHILGEGIIG QAAFTGKHQW IFSDSNGKGS DSAGNEKIFQ DESELQVQFS SGIKTIAVIS 120 VGRRGVVQFG STKKILERLE LLAETEKLFY DMGSCHGLTP LEIETCNLDG WFTSFILGQN 180 PTTEQGGCSV EPTGWSCSLQ SLIEPSCSVH DYSMNSVQQN LSHLTSQIQT ISIEAQPISA 240 GKISRVNSLA ANTPCTSEGS ILTSLPGEKG EWDPSIVFPK KDTEQNLQGH STFTSFYSTG 300 ELVDSELHNL DSFGKTKQEQ HSFGTNAGLL DSVISQQRSI EEFNLDDFIT DLSSSFTMDD 360 FSQWFSPLPQ HHIHGAGATT TTDPSCSVGV TSVPSVPIGG DAVINIPVGQ IVNSSKSSIA 420 DALTSSVEKS TMVHDNGNDL FSGTGMDFRL RKAGELSENI DMPLLHSANK VVASGMSSSM 480 AGKRKGLFSE LGLEELLGQL EGLSCSGGGM NLAQHSHTWD KSNDTIFSKE FHLKSQVGLW 540 IDDSYGVKAG NAVVTTAKKP TRKRAKPGES SRPRPKDRQL IQDRIKELRG IIPHSGKQLS 600 IDHLLERTIK YLLFLQGVTK YADEIKQADE PKLIGQGNRK LLKHNTMSGG ATWAFEVGAQ 660 SIPIVVKDLN PPGQMLVEV*

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MGEVAMGSAL KQTLKNLCCS NGWCYGVFWR FDPRNSMLLT MEDAYYEQKM GPLVDKMLLK  60
FHILGEGIIG QAAFTGKHQW IFSDSNGKGS DSAGNEKIFQ DESELQVQFS SGIKTIAVIS  120
VGRRGVVQFG STKKILERLE LLAETEKLFY DMGSCHGLTP LEIETCNLDG WFTSFILGQN  180
PTTEQGGCSV EPTGWSCSLQ SLIEPSCSVH DYSMNSVQQN LSHLTSQIQT ISIEAQPISA  240
GKISRVNSLA ANTPCTSEGS ILTSLPGEKG EWDPSIVFPK KDTEQNLQGH STFTSFYSTG  300
ELVDSELHNL DSFGKTKQEQ HSFGTNAGLL DSVISQQRSI EEFNLDDFIT DLSSSFTMDD  360
FSQWFSPLPQ HHIHGAGATT TTDPSCSVGV TSVPSVPIGG DAVINIPVGQ IVNSSKSSIA  420
DALTSSVEKS TMVHDNGNDL FSGTGMDFRL RKAGELSENI DMPLLHSANK VVASGMSSSM  480
AGKRKGLFSE LGLEELLGQL EGLSCSGGGM NLAQHSHTWD KSNDTIFSKE FHLKSQVGLW  540
IDDSYGVKAG NAVVTTAKKP TRKRAKPGES SRPRPKDRQL IQDRIKELRG IIPHSGKQLS  600
IDHLLERTIK YLLFLQGVTK YADEIKQADE PKLIGQGNRK LLKHNTMSGG ATWAFEVGAQ  660
SIPIVVKDLN PPGQMLVEV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012474800.1	0.0	PREDICTED: transcription factor bHLH157 isoform X3
TrEMBL	A0A0D2RYL9	0.0	A0A0D2RYL9_GOSRA; Uncharacterized protein
STRING	Gorai.004G130500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	8e-26	conserved peptide upstream open reading frame 7

Link Out ? help Back to Top
Phytozome	Gorai.004G130500.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]